View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13795_low_8 (Length: 377)
Name: NF13795_low_8
Description: NF13795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13795_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 165 - 363
Target Start/End: Complemental strand, 5559027 - 5558829
Alignment:
| Q |
165 |
ctaacaaacagatgataacgtgtgtgtattctttgttgtatttccatatctatctgttttttgttgaactcacacaagctaatgatttactgttgtaggc |
264 |
Q |
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| T |
5559027 |
ctaacaaacatatgataacgtgtgtgtattctttgttgtatttccatatctatctgttttttgttgaacttacacaagctaatgatttactgttgtaggc |
5558928 |
T |
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| Q |
265 |
caactacttggattcaagaaattcatcccaccctttgcaaacactattggttcagacatacttaaaggtgttaactatgcatctggtgcagctggaatt |
363 |
Q |
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| T |
5558927 |
caactacttggattcaagaaattcatcccaccctttgcaaacactattggttcagatatacttaaaggtgttaactatgcatctggtgcagctggaatt |
5558829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 5559182 - 5559048
Alignment:
| Q |
1 |
attatgaaaatagtgattttcatttttaataatttagagatcaatgtttagagattttaagagaaactgttcaaaataacttatccttaggagcaatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
5559182 |
attatgaaaatagtgattttcatttttaataatttagagatcaatgtttagagattttaagagaaactgttcaaaataacttatcctttgaagcaatttt |
5559083 |
T |
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| Q |
101 |
agatgtttcgttcaaattcatattttttcttttcc |
135 |
Q |
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| T |
5559082 |
agatgttttgttcaaattcatattttttcttttcc |
5559048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 234 - 361
Target Start/End: Complemental strand, 5568619 - 5568492
Alignment:
| Q |
234 |
tcacacaagctaatgatttactgttgtaggccaactacttggattcaagaaattcatcccaccctttgcaaacactattggttcagacatacttaaaggt |
333 |
Q |
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| T |
5568619 |
tcacacaagctaacgattaaccgttgtaggccaactacttggattcaagaatttcatcccaccatttgcaaacaatattggctcaggcatacttaaaggt |
5568520 |
T |
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| Q |
334 |
gttaactatgcatctggtgcagctggaa |
361 |
Q |
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||||||||||||||| || | ||||||| |
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| T |
5568519 |
gttaactatgcatctagttcggctggaa |
5568492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 5576407 - 5576325
Alignment:
| Q |
281 |
agaaattcatcccaccctttgcaaacactattggttcagacatacttaaaggtgttaactatgcatctggtgcagctggaatt |
363 |
Q |
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| T |
5576407 |
agaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaatt |
5576325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 265 - 363
Target Start/End: Complemental strand, 5573343 - 5573245
Alignment:
| Q |
265 |
caactacttggattcaagaaattcatcccaccctttgcaaacactattggttcagacatacttaaaggtgttaactatgcatctggtgcagctggaatt |
363 |
Q |
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||||| |||||||| |||| ||||| ||||| |||||||||| | ||||||||||||||| |||||||| |||||||||||||| | |||||||||| |
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| T |
5573343 |
caacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaatt |
5573245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 5593064 - 5592982
Alignment:
| Q |
281 |
agaaattcatcccaccctttgcaaacactattggttcagacatacttaaaggtgttaactatgcatctggtgcagctggaatt |
363 |
Q |
| |
|
|||||||||| ||||| ||||| |||| || ||||||||||||||| |||||||| |||||||||||||| | |||||||||| |
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| T |
5593064 |
agaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaatt |
5592982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 5586828 - 5586746
Alignment:
| Q |
281 |
agaaattcatcccaccctttgcaaacactattggttcagacatacttaaaggtgttaactatgcatctggtgcagctggaatt |
363 |
Q |
| |
|
|||| ||||| ||||| |||||||||| || ||| ||||||||||| |||||||| ||||| |||||||| |||||||||||| |
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| T |
5586828 |
agaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactacgcatctggcgcagctggaatt |
5586746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 5582577 - 5582495
Alignment:
| Q |
281 |
agaaattcatcccaccctttgcaaacactattggttcagacatacttaaaggtgttaactatgcatctggtgcagctggaatt |
363 |
Q |
| |
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|||| ||||| | ||| |||||||||| || ||||||||||||||| ||||||| |||||||||||| ||| |||||||||| |
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| T |
5582577 |
agaacttcattctaccatttgcaaacattagtggttcagacatactctaaggtgtgaactatgcatctcgtggagctggaatt |
5582495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 347
Target Start/End: Original strand, 12064822 - 12064898
Alignment:
| Q |
271 |
cttggattcaagaaattcatcccaccctttgcaaacactattggttcagacatacttaaaggtgttaactatgcatc |
347 |
Q |
| |
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| T |
12064822 |
cttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcaaagatgtgaaatatgcatc |
12064898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 12059453 - 12059528
Alignment:
| Q |
272 |
ttggattcaagaaattcatcccaccctttgcaaacactattggttcagacatacttaaaggtgttaactatgcatc |
347 |
Q |
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||||||| |||||||||| ||| | ||||||||||||| ||||||||||||||| | || ||| ||||||||||| |
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| T |
12059453 |
ttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcagagatgtgaactatgcatc |
12059528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38565544 - 38565601
Alignment:
| Q |
1 |
attatgaaaatagtgattttcatttttaataatttagagatcaatgtttagagatttt |
58 |
Q |
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|||||||||| ||||||||| || | |||||||||||||| ||| |||||||||||| |
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| T |
38565544 |
attatgaaaaaagtgattttgatactcaataatttagagattaatttttagagatttt |
38565601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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