View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13796_high_1 (Length: 764)

Name: NF13796_high_1
Description: NF13796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13796_high_1
NF13796_high_1
[»] chr8 (19 HSPs)
chr8 (20-411)||(559547-559938)
chr8 (396-764)||(559954-560322)
chr8 (399-566)||(34273045-34273211)
chr8 (396-498)||(10340220-10340322)
chr8 (399-486)||(38924402-38924489)
chr8 (348-498)||(9030541-9030691)
chr8 (454-566)||(34273179-34273290)
chr8 (398-469)||(30370054-30370125)
chr8 (472-566)||(559878-559971)
chr8 (393-498)||(29204601-29204706)
chr8 (399-486)||(8238754-8238841)
chr8 (411-469)||(32729430-32729488)
chr8 (451-498)||(21150238-21150285)
chr8 (418-469)||(33435411-33435462)
chr8 (440-498)||(37616280-37616338)
chr8 (413-455)||(38202007-38202049)
chr8 (396-425)||(10340284-10340313)
chr8 (347-408)||(34273233-34273294)
chr8 (496-572)||(41395682-41395759)
[»] chr3 (13 HSPs)
chr3 (390-540)||(580995-581143)
chr3 (397-498)||(12767309-12767410)
chr3 (390-507)||(50670069-50670186)
chr3 (410-469)||(25258080-25258139)
chr3 (402-469)||(27177327-27177394)
chr3 (390-446)||(5182253-5182309)
chr3 (399-519)||(37058943-37059063)
chr3 (399-467)||(40413445-40413513)
chr3 (399-469)||(6588319-6588389)
chr3 (524-570)||(7201662-7201708)
chr3 (400-486)||(52205030-52205114)
chr3 (400-445)||(24498251-24498296)
chr3 (350-423)||(38963940-38964013)
[»] chr2 (19 HSPs)
chr2 (347-479)||(15538888-15539018)
chr2 (399-489)||(15404919-15405009)
chr2 (401-539)||(19894925-19895062)
chr2 (396-467)||(7152092-7152163)
chr2 (415-498)||(28314646-28314729)
chr2 (402-508)||(34557299-34557404)
chr2 (396-469)||(12670767-12670840)
chr2 (399-447)||(23465778-23465826)
chr2 (516-558)||(12670861-12670903)
chr2 (409-539)||(14442110-14442239)
chr2 (462-571)||(30481604-30481712)
chr2 (409-469)||(21488860-21488920)
chr2 (454-567)||(12670693-12670802)
chr2 (396-435)||(33710577-33710616)
chr2 (399-469)||(4422824-4422894)
chr2 (348-406)||(5292795-5292853)
chr2 (476-521)||(17296699-17296743)
chr2 (390-539)||(30481679-30481827)
chr2 (398-467)||(37172605-37172674)
[»] chr7 (24 HSPs)
chr7 (397-520)||(25690718-25690840)
chr7 (396-490)||(35851954-35852053)
chr7 (397-469)||(16780774-16780846)
chr7 (390-486)||(41195686-41195782)
chr7 (398-469)||(5721685-5721756)
chr7 (399-538)||(31726585-31726723)
chr7 (495-566)||(31726731-31726802)
chr7 (454-564)||(16780812-16780921)
chr7 (400-486)||(22600648-22600734)
chr7 (416-498)||(48078598-48078680)
chr7 (400-468)||(45773203-45773271)
chr7 (399-486)||(101284-101371)
chr7 (399-469)||(11754697-11754767)
chr7 (412-469)||(24558528-24558586)
chr7 (524-566)||(44041632-44041674)
chr7 (347-431)||(35851906-35851990)
chr7 (347-414)||(35852057-35852124)
chr7 (412-487)||(37108920-37108995)
chr7 (452-498)||(11687825-11687871)
chr7 (429-487)||(21346399-21346457)
chr7 (348-423)||(22181708-22181785)
chr7 (416-469)||(24447908-24447961)
chr7 (402-435)||(28557284-28557317)
chr7 (347-412)||(31726741-31726806)
[»] chr5 (16 HSPs)
chr5 (393-573)||(35943445-35943624)
chr5 (399-540)||(9962856-9962997)
chr5 (396-566)||(18398477-18398646)
chr5 (390-543)||(23311753-23311905)
chr5 (349-446)||(39333722-39333819)
chr5 (454-566)||(23311682-23311794)
chr5 (348-399)||(14122593-14122644)
chr5 (416-498)||(43101204-43101285)
chr5 (415-566)||(35631398-35631548)
chr5 (397-537)||(896068-896207)
chr5 (454-558)||(18398611-18398714)
chr5 (374-486)||(26278500-26278612)
chr5 (418-469)||(14105980-14106031)
chr5 (454-540)||(43101134-43101219)
chr5 (402-467)||(35895025-35895090)
chr5 (347-412)||(35943448-35943513)
[»] scaffold0223 (1 HSPs)
scaffold0223 (397-497)||(16316-16417)
[»] chr4 (18 HSPs)
chr4 (348-452)||(40421942-40422046)
chr4 (396-539)||(40423256-40423398)
chr4 (454-566)||(43115516-43115627)
chr4 (396-489)||(37397942-37398035)
chr4 (396-457)||(43115592-43115653)
chr4 (415-487)||(5961798-5961870)
chr4 (397-469)||(25844269-25844341)
chr4 (347-406)||(43115512-43115571)
chr4 (413-467)||(3741710-3741764)
chr4 (399-469)||(9954523-9954593)
chr4 (348-409)||(25844477-25844538)
chr4 (405-469)||(79526-79590)
chr4 (413-469)||(19689267-19689323)
chr4 (495-566)||(7379544-7379615)
chr4 (399-486)||(24673011-24673098)
chr4 (495-566)||(25844464-25844535)
chr4 (412-486)||(11548151-11548225)
chr4 (524-566)||(37398065-37398107)
[»] chr1 (12 HSPs)
chr1 (396-516)||(34062648-34062767)
chr1 (431-539)||(34123115-34123222)
chr1 (415-560)||(24602983-24603125)
chr1 (393-566)||(25484943-25485115)
chr1 (429-484)||(32191144-32191199)
chr1 (418-501)||(8041143-8041227)
chr1 (437-566)||(9450237-9450365)
chr1 (444-518)||(31847369-31847442)
chr1 (410-467)||(768300-768357)
chr1 (396-428)||(39126963-39126995)
chr1 (454-537)||(34062601-34062683)
chr1 (398-487)||(17916172-17916261)
[»] chr6 (6 HSPs)
chr6 (427-511)||(2608361-2608444)
chr6 (410-469)||(22682572-22682632)
chr6 (398-469)||(32820790-32820861)
chr6 (397-469)||(33617651-33617723)
chr6 (520-570)||(1944868-1944918)
chr6 (413-470)||(24881946-24882003)
[»] scaffold0110 (1 HSPs)
scaffold0110 (410-540)||(31337-31466)


Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 559547 - 559938
Alignment:
Q  20 ataggtagatcctttcgtttgatttatatattctattttgacttgttnnnnnnnntgttgtgaatgaatatcgataagggatcaaaaatgcttttatgcc 119  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  559547 ataggtagatcctttcgtttgttttatatattctattttaacttgttaaaaaaaatgttgtgaatgaatatcgataagggatcaaaaatgcttttatgcc 559646  T
Q  120 aaatatgttttatgctacataagacaatttttatttttggctgaacatgaccattatacattcgattgaaaattacgtaagaaaaaagttattaaacatc 219  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  559647 aaatatattctatgctacataagacaatttttatttttggctgaacatgaccattatacattcgattgaaaattatgtaagaaaaaagttattaaacatc 559746  T
Q  220 gtgaaccatacaaataattcagattaaaacattgtctaatgaccaaaacttatttggaccacattatgattctccatcattcatctatgggcttttccaa 319  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  559747 gtgaaacatacaaataattaagattaaaacattgtctaatgaccaaaacttatttggaccacattatgattctccatcattcatctatgggcttttccaa 559846  T
Q  320 atttttcaaaacttgcccatatctatcagaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcacgc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  559847 atttttcaaaacttgcccatatctatcagaaaattgctcttctcgcttttgattttgctcattcctttaatttagtgtgagttaactcacgc 559938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 396 - 764
Target Start/End: Original strand, 559954 - 560322
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaa 495  Q
    ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  559954 gtgagttaactcacgctgacatttttaagaccgattcaattattttttaagttggttcaaccgattttaaaattgccagcgtgagttaactcacgttgaa 560053  T
Q  496 aaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagtgagaagagcaattctctatccatcaatcttctatgggcctgc 595  Q
    |||||||| ||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  560054 aaaatgtcaagcgtaagttaactcatattgaattaagggaataagaaaaatcaaaagtgagaagagcaattctctatccatcaatcttctatgggcctgc 560153  T
Q  596 tcaagctcttccatttaagtgccaacagagaaaaggtcttcatggatgatccattttccataatagcacaattagcaaacctttgtagttctttcattct 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  560154 tcaagctcttccatttaagtgccaacagagaaaaggtcttcatggatgacccattttccataatagcacaattagcaaacttttgtagttctttcattct 560253  T
Q  696 tcttcgaatttctccactttccaaaccctccatgataccctttataatattagccagttcttcctttac 764  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  560254 tcttcgaatttctccactctccaaaccctccatgataccctttataatattagccacttcttcctttac 560322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 399 - 566
Target Start/End: Complemental strand, 34273211 - 34273045
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
    ||||||||||| ||   |||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||  ||||||||||||| ||||| || ||||    
T  34273211 agttaactcacactagtacttttaagatcggttcaatcactgtttaagtcggttcaaccgattttaaaagtgtcagcgtgagttaattcacgctg-aaaa 34273113  T
Q  499 atgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagtgagaagagcaatt 566  Q
    ||| |||||  || |||||||||  ||| |||||| |||||| ||  | ||||| |||||||||||||    
T  34273112 atgccgagcagaagttaactcacgctgagttaaggaaatgagcaattttaaaagggagaagagcaatt 34273045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 396 - 498
Target Start/End: Original strand, 10340220 - 10340322
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaa 495  Q
    |||||||||||||| ||||||||||| ||| || |||||| | |||||||||||| ||  ||||| ||||||||  ||||||||||||||||||||||||    
T  10340220 gtgagttaactcacactgacactttttagatcgattcaatcattttttaagttgggtcggccgatcttaaaagtgtcagcgtgagttaactcacgttgaa 10340319  T
Q  496 aaa 498  Q
    |||    
T  10340320 aaa 10340322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 399 - 486
Target Start/End: Original strand, 38924402 - 38924489
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaact 486  Q
    |||||||||  |||| ||||||||||| ||||||||| ||||||||||| |||||||| ||| ||||||||  |||||||||||||||    
T  38924402 agttaactcgtgctggcacttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaagtgacagcgtgagttaact 38924489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 348 - 498
Target Start/End: Original strand, 9030541 - 9030691
Alignment:
Q  348 gaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaagt 447  Q
    ||||||||||||||||  |||    |||| ||||| | |||||| || |||||||||||||| | ||||||||||||| || |||||| ||||||||| |    
T  9030541 gaaaattgctcttctccctttcatgtttgttcatttccttaattcagcgtgagttaactcacaccgacacttttaagatcgattcaatcactttttaaat 9030640  T
Q  448 tggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
     |||||||  ||| ||||||||    |||||| ||||||||||||||||||    
T  9030641 cggttcaattgatcttaaaagtgtgcgcgtgaattaactcacgttgaaaaa 9030691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 454 - 566
Target Start/End: Original strand, 34273179 - 34273290
Alignment:
Q  454 aaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagt 553  Q
    ||||||| |||||||| | || ||||||||||| | | ||||||| || ||||| | | | ||||||| |||||||||||||||||| |||| |||||||    
T  34273179 aaccgatcttaaaagtactagtgtgagttaactaatgctgaaaaa-tgccgagcatgagtaaactcacgttgaattaagggaatgagcaaaaacaaaagt 34273277  T
Q  554 gagaagagcaatt 566  Q
    |||||||||||||    
T  34273278 gagaagagcaatt 34273290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 469
Target Start/End: Complemental strand, 30370125 - 30370054
Alignment:
Q  398 gagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    ||||||||||  |||| ||| |||| || ||||||||| |||||||||||||||||||||||||||||||||    
T  30370125 gagttaactcctgctggcacatttatgatcggttcaatcactttttaagttggttcaaccgattttaaaagt 30370054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 472 - 566
Target Start/End: Complemental strand, 559971 - 559878
Alignment:
Q  472 cagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagtgagaagagcaatt 566  Q
    ||||||||||||||||||| ||||||| || |  |||| | |||||||||| | |||||| |||||||| ||||||||||| |||||||||||||    
T  559971 cagcgtgagttaactcacgctgaaaaa-tgccaggcgtgagttaactcacactaaattaaaggaatgagcaaaatcaaaagcgagaagagcaatt 559878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 393 - 498
Target Start/End: Original strand, 29204601 - 29204706
Alignment:
Q  393 agtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgtt 492  Q
    |||||||||||| |||||||   |||||||| | ||||||||| ||||||||||| || ||||| ||| ||||||||  |||||| |||||||| ||| |    
T  29204601 agtgtgagttaattcacgctagtacttttaaaatcggttcaatcactttttaagtcggatcaactgatcttaaaagtgacagcgtaagttaacttacgct 29204700  T
Q  493 gaaaaa 498  Q
    ||||||    
T  29204701 gaaaaa 29204706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 486
Target Start/End: Original strand, 8238754 - 8238841
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaact 486  Q
    ||||||||||||||||||||||| ||| | ||||||| ||||||| ||| || ||||||||| |||||||| | |  |||||||||||    
T  8238754 agttaactcacgctgacactttttagatcagttcaatcacttttttagtcggatcaaccgatcttaaaagtgctattgtgagttaact 8238841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 411 - 469
Target Start/End: Original strand, 32729430 - 32729488
Alignment:
Q  411 ctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    ||||||||||||||| | ||||||||| ||||||||| |||||||||||| ||||||||    
T  32729430 ctgacacttttaagatcagttcaattattttttaagtcggttcaaccgatcttaaaagt 32729488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 21150238 - 21150285
Alignment:
Q  451 ttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
    |||||||||| ||||||||  |||||| ||||||||||||||||||||    
T  21150238 ttcaaccgatcttaaaagtgtcagcgtaagttaactcacgttgaaaaa 21150285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 33435462 - 33435411
Alignment:
Q  418 ttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||| | ||| ||||||||||||||| |||||||||||| ||||||||    
T  33435462 ttttaagatcagtttaattactttttaagtcggttcaaccgatcttaaaagt 33435411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 37616338 - 37616280
Alignment:
Q  440 ttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
    ||||||||||| |||||| || ||||||||  |||||||||||||| |||| |||||||    
T  37616338 ttttaagttggatcaaccaatcttaaaagtgtcagcgtgagttaacccacgctgaaaaa 37616280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 413 - 455
Target Start/End: Original strand, 38202007 - 38202049
Alignment:
Q  413 gacacttttaagaccggttcaattactttttaagttggttcaa 455  Q
    ||||||||||||| ||||||||||||||||||| | |||||||    
T  38202007 gacacttttaagatcggttcaattactttttaaatcggttcaa 38202049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 10340313 - 10340284
Alignment:
Q  396 gtgagttaactcacgctgacacttttaaga 425  Q
    ||||||||||||||||||||||||||||||    
T  10340313 gtgagttaactcacgctgacacttttaaga 10340284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 34273294 - 34273233
Alignment:
Q  347 agaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactca 408  Q
    |||||||||||||||||  ||||| ||||||||||||| |||||| |  ||||||| |||||    
T  34273294 agaaaattgctcttctcacttttgtttttgctcattcccttaattcaacgtgagtttactca 34273233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 41395682 - 41395759
Alignment:
Q  496 aaaatgtcgagcgtaaattaactcacattgaatt-aagggaatgagaaaaatcaaaagtgagaagagcaattctctat 572  Q
    |||||| ||||||||  ||||||||| ||||||| ||||||||||  ||  ||| ||||||||||||||||| |||||    
T  41395682 aaaatgccgagcgtacgttaactcacgttgaatttaagggaatgaagaatttcataagtgagaagagcaattttctat 41395759  T

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Target: chr3 (Bit Score: 63; Significance: 6e-27; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 390 - 540
Target Start/End: Complemental strand, 581143 - 580995
Alignment:
Q  390 tttagtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcac 489  Q
    ||||| |||||||||||||| ||| ||||||||||||| ||||||| |||||||||||  ||||||||||| |||||||| |||||||||||||||||||    
T  581143 tttagcgtgagttaactcacactg-cacttttaagacccgttcaataactttttaagtctgttcaaccgatcttaaaagtaccagcgtgagttaactcac 581045  T
Q  490 gttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgag 540  Q
      || | ||||| ||| ||| | |||| |||| ||||||||||| ||||||    
T  581044 actg-ataaatgccgaacgtgagttaattcacgttgaattaaggcaatgag 580995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 397 - 498
Target Start/End: Complemental strand, 12767410 - 12767309
Alignment:
Q  397 tgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaa 496  Q
    |||||||||||||||| |||||||||||| || |||||| ||||||||||| || ||||||||| ||| ||||  ||||||| ||||| ||||| |||||    
T  12767410 tgagttaactcacgctaacacttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtgtcagcgtgggttaattcacgctgaaa 12767311  T
Q  497 aa 498  Q
    ||    
T  12767310 aa 12767309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 390 - 507
Target Start/End: Complemental strand, 50670186 - 50670069
Alignment:
Q  390 tttagtgtgagttaactcacgctgacactttt-aagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactca 488  Q
    ||||||| |||||||| |||||||| |||||| |||| || |||||| | |||||| ||  ||||||||||||||||||||  |||||| ||||||||||    
T  50670186 tttagtgcgagttaacccacgctgaaactttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtgtcagcgtaagttaactca 50670087  T
Q  489 cgttgaaaaaatgtcgagc 507  Q
    || || |||||||||||||    
T  50670086 cgctg-aaaaatgtcgagc 50670069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 410 - 469
Target Start/End: Complemental strand, 25258139 - 25258080
Alignment:
Q  410 gctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||||||||||| | ||||||| ||||||||||| |||||||||||| ||||||||    
T  25258139 gctgacacttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaagt 25258080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 402 - 469
Target Start/End: Original strand, 27177327 - 27177394
Alignment:
Q  402 taactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||| ||||||||||| ||| ||||||||| | |||||||||||| ||||||||| ||||||||    
T  27177327 taactcacactgacactttttagatcggttcaatcattttttaagttgggtcaaccgatcttaaaagt 27177394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 5182309 - 5182253
Alignment:
Q  390 tttagtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaag 446  Q
    |||||||||| |||||||||||||||||||||| || | ||||||| | ||||||||    
T  5182309 tttagtgtgatttaactcacgctgacacttttatgatcagttcaatcaatttttaag 5182253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 519
Target Start/End: Complemental strand, 37059063 - 37058943
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
    |||||||||||  | ||| |||||||| || |||||| | ||||||||| | |||||||||| ||||||||    |||| ||||||||  || |||||||    
T  37059063 agttaactcactttaacatttttaagatcgattcaatcattttttaagtcgattcaaccgatcttaaaagtgtttgcgttagttaacttccgctgaaaaa 37058964  T
Q  499 atgtcgagcgtaaattaactc 519  Q
    || |||||||| | |||||||    
T  37058963 atatcgagcgtgagttaactc 37058943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 40413513 - 40413445
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaa 467  Q
    |||||||||||||  ||||| || ||| ||||||||| ||||||||||| || ||||||||| ||||||    
T  40413513 agttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 40413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 6588319 - 6588389
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||||||||||||||||||  || ||||||||  |  |||||||| || ||||||||| ||||||||    
T  6588319 agttaactcacgctgacacttttttgatcggttcaaacatgttttaagtcgggtcaaccgatcttaaaagt 6588389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 7201708 - 7201662
Alignment:
Q  524 tgaattaagggaatgagaaaaatcaaaagtgagaagagcaattctct 570  Q
    ||||||||||||||||| |||| |||||| |||||| ||||||||||    
T  7201708 tgaattaagggaatgagcaaaaacaaaagggagaagggcaattctct 7201662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 400 - 486
Target Start/End: Complemental strand, 52205114 - 52205030
Alignment:
Q  400 gttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaact 486  Q
    ||||||||||||||| |||||| ||| | ||||||| || |||||||| || ||||||||| ||||||||  |||| ||||||||||    
T  52205114 gttaactcacgctgatactttttagatc-gttcaatcac-ttttaagtcgggtcaaccgatcttaaaagtgtcagcatgagttaact 52205030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 24498296 - 24498251
Alignment:
Q  400 gttaactcacgctgacacttttaagaccggttcaattactttttaa 445  Q
    |||||||| || || ||||||||||| |||||||||||||||||||    
T  24498296 gttaactctcgttggcacttttaagatcggttcaattactttttaa 24498251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 38963940 - 38964013
Alignment:
Q  350 aaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcacgctgacacttttaa 423  Q
    |||||||| |||||  ||||||||||||||||||  | |||| || |||||||||||||  | |||||||||||    
T  38963940 aaattgctattctcaattttgattttgctcattctctcaattcagcgtgagttaactcataccgacacttttaa 38964013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 347 - 479
Target Start/End: Original strand, 15538888 - 15539018
Alignment:
Q  347 agaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaag 446  Q
    ||||||||| ||||||| |||| | ||||||||||| | |||||||||||||||||||   ||| || ||||||||||| ||||||||||||||||||||    
T  15538888 agaaaattgttcttctccttttcgtttttgctcatttccttaatttagtgtgagttaat--acgttgtcacttttaagatcggttcaattactttttaag 15538985  T
Q  447 ttggttcaaccgattttaaaagtcccagcgtga 479  Q
    | ||||||| |||| ||||||||  ||||||||    
T  15538986 tcggttcaatcgatcttaaaagtgtcagcgtga 15539018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 399 - 489
Target Start/End: Original strand, 15404919 - 15405009
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcac 489  Q
    |||||||||||| ||| |||||||| || |||||||| ||||||||||| || ||||||||||||||||||  || |||||||||||||||    
T  15404919 agttaactcacgttgatacttttaaaactggttcaatcactttttaagtcgggtcaaccgattttaaaagtgtcaacgtgagttaactcac 15405009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 401 - 539
Target Start/End: Original strand, 19894925 - 19895062
Alignment:
Q  401 ttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaat 500  Q
    ||||||||| | | |||||||||||||| ||| || ||||||||||| ||||||||| ||||||||| |   || |||| ||||||   | || ||||||    
T  19894925 ttaactcacacggtcacttttaagaccgcttcgatcactttttaagtcggttcaaccaattttaaaaatgaaagtgtgaattaacttctgctg-aaaaat 19895023  T
Q  501 gtcgagcgtaaattaactcacattgaattaagggaatga 539  Q
    | ||||||| |||||||||||| |||| |||||||||||    
T  19895024 gccgagcgtgaattaactcacactgaaataagggaatga 19895062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 467
Target Start/End: Original strand, 7152092 - 7152163
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaa 467  Q
    ||||||||||||||| | |||||||||| | |||||||||||||||||||   |||||||||||||| ||||    
T  7152092 gtgagttaactcacgttaacacttttaatatcggttcaattactttttaaaccggttcaaccgatttaaaaa 7152163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 498
Target Start/End: Complemental strand, 28314729 - 28314646
Alignment:
Q  415 cacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
    ||||||||||| ||||||||| ||||||||| |||||| ||||||| ||||||||  ||||  ||||||||||  |||||||||    
T  28314729 cacttttaagatcggttcaatcactttttaaattggttgaaccgatcttaaaagtgtcagcaggagttaactctagttgaaaaa 28314646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 402 - 508
Target Start/End: Complemental strand, 34557404 - 34557299
Alignment:
Q  402 taactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatg 501  Q
    |||||||||| |||| |||||||| | ||||||| | ||||||| | ||||||| |||| |||||||| |  | ||||||||||||||| || |||||||    
T  34557404 taactcacgccgacatttttaagatctgttcaatcattttttaaatcggttcaatcgatcttaaaagtgctggtgtgagttaactcacgctg-aaaaatg 34557306  T
Q  502 tcgagcg 508  Q
    |||||||    
T  34557305 tcgagcg 34557299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 396 - 469
Target Start/End: Original strand, 12670767 - 12670840
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||| ||||||||||||||||||||||||| ||||||||| | ||||||||  |  ||||||||| ||||||||    
T  12670767 gtgacttaactcacgctgacacttttaagatcggttcaatcaatttttaagccgactcaaccgatcttaaaagt 12670840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 23465826 - 23465778
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagt 447  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  23465826 agttaacttacgatgacacttttaagatcggttcaattactttttaagt 23465778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 12670861 - 12670903
Alignment:
Q  516 actcacattgaattaagggaatgagaaaaatcaaaagtgagaa 558  Q
    |||||| |||||||||||||||||| |||||||||||||||||    
T  12670861 actcacgttgaattaagggaatgagtaaaatcaaaagtgagaa 12670903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 409 - 539
Target Start/End: Original strand, 14442110 - 14442239
Alignment:
Q  409 cgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcg 508  Q
    ||||||||||||||||| | || |||| ||||||||||  | |||||| ||| ||||| || | ||||||||||||| |||  || |||||| |||| ||    
T  14442110 cgctgacacttttaagatcagtacaatcactttttaagccgattcaactgatcttaaaggtgctagcgtgagttaacccacactg-aaaaatatcgaacg 14442208  T
Q  509 taaattaactcacattgaattaagggaatga 539  Q
      |||||||||  ||| ||||||||||||||    
T  14442209 ggaattaactcctattaaattaagggaatga 14442239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 462 - 571
Target Start/End: Complemental strand, 30481712 - 30481604
Alignment:
Q  462 ttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagtgagaagag 561  Q
    |||||||| |||| ||||||||||||||| | |||||||||||| | | | ||||||| |  ||||||||| ||||||| |||| | |||| |||||||     
T  30481712 ttaaaagtgccagtgtgagttaactcacgct-aaaaaatgtcgaacatgagttaactcgcgatgaattaagagaatgagcaaaaacgaaagggagaagaa 30481614  T
Q  562 caattctcta 571  Q
    ||||| ||||    
T  30481613 caattttcta 30481604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 469
Target Start/End: Original strand, 21488860 - 21488920
Alignment:
Q  409 cgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||| |||||||||||| ||||||||| | |||||||||  ||||||||||| ||||||||    
T  21488860 cgctaacacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagt 21488920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 567
Target Start/End: Complemental strand, 12670802 - 12670693
Alignment:
Q  454 aaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagt 553  Q
    ||||||| ||||||||  ||||||||||||| ||||||||  ||||||||||  || | |||||||||  |||||||||||   ||| ||||||||||||    
T  12670802 aaccgatcttaaaagtgtcagcgtgagttaagtcacgttg-caaaatgtcgaatgtgagttaactcacgctgaattaaggg---gagcaaaatcaaaagt 12670707  T
Q  554 gagaagagcaattc 567  Q
     |||| | ||||||    
T  12670706 tagaaaaacaattc 12670693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 435
Target Start/End: Original strand, 33710577 - 33710616
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccggttcaat 435  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  33710577 gtgagttaacttacgctgacacttttaagatcggttcaat 33710616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 399 - 469
Target Start/End: Complemental strand, 4422894 - 4422824
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    ||||||||||||| | ||||||| ||| ||| ||||| ||||||||||| |  ||||||||| ||||||||    
T  4422894 agttaactcacgccgtcactttttagatcggctcaatcactttttaagtcgaatcaaccgatcttaaaagt 4422824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 5292795 - 5292853
Alignment:
Q  348 gaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaact 406  Q
    ||||||||||||||| || |||| ||||||| ||||| |||||| || |||||||||||    
T  5292795 gaaaattgctcttcttgtctttggttttgcttattccattaattcagcgtgagttaact 5292853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 521
Target Start/End: Original strand, 17296699 - 17296743
Alignment:
Q  476 gtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcac 521  Q
    |||||||||||||||||||||||| | ||||||||| |||||||||    
T  17296699 gtgagttaactcacgttgaaaaaa-gccgagcgtaacttaactcac 17296743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 539
Target Start/End: Original strand, 30481679 - 30481827
Alignment:
Q  390 tttagtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcac 489  Q
    ||||| |||||||||||||| ||| ||||||||||| | ||||||| | ||||||||    ||||||| || |||||||| | || || | ||||||  |    
T  30481679 tttagcgtgagttaactcacactggcacttttaagatcagttcaataattttttaagccaattcaacctatcttaaaagttctagtgtaaattaacttcc 30481778  T
Q  490 gttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatga 539  Q
    | || ||||||||| | ||| | || |||||| || ||||||||||||||    
T  30481779 gatg-aaaaatgtcaaacgtgagttgactcacgttaaattaagggaatga 30481827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 37172674 - 37172605
Alignment:
Q  398 gagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaa 467  Q
    |||||||||| |  |||||||||||| | ||||||||| |||||||||||  |||||||| || ||||||    
T  37172674 gagttaactcccattgacacttttaacatcggttcaatcactttttaagtcagttcaaccaatcttaaaa 37172605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 397 - 520
Target Start/End: Original strand, 25690718 - 25690840
Alignment:
Q  397 tgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaa 496  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||||||  |||||||||||| ||||||||  |||| ||| |||||||||| |||||    
T  25690718 tgagttaactcacgctgacactttttagatcggttcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattaactcacgctgaaa 25690817  T
Q  497 aaatgtcgagcgtaaattaactca 520  Q
    ||| ||| |||  |||||||||||    
T  25690818 aaa-gtcaagcagaaattaactca 25690840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 396 - 490
Target Start/End: Complemental strand, 35852053 - 35851954
Alignment:
Q  396 gtgagttaactcacgctga-----cacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacg 490  Q
    |||||||||||||||||||     ||||||||||| ||||||||| ||||| ||||| |||||||||||| ||||||||  ||| ||||||||| |||||    
T  35852053 gtgagttaactcacgctgaagtgacacttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaagtgtcagtgtgagttaattcacg 35851954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 397 - 469
Target Start/End: Complemental strand, 16780846 - 16780774
Alignment:
Q  397 tgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||||| |||| | ||||||||||| ||||||||| ||||||||||| | |||||||||| ||||||||    
T  16780846 tgagttaacttacgcgggcacttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaaaagt 16780774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 390 - 486
Target Start/End: Original strand, 41195686 - 41195782
Alignment:
Q  390 tttagtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaact 486  Q
    ||||| || ||||||||||||||||||||||||||   | |||||| |||||||||| ||||||||| ||| ||||||||  || | ||||||||||    
T  41195686 tttagcgttagttaactcacgctgacacttttaaggttgattcaatcactttttaagctggttcaactgatcttaaaagtgtcaacttgagttaact 41195782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 398 - 469
Target Start/End: Original strand, 5721685 - 5721756
Alignment:
Q  398 gagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    ||||||||||||| ||| |||||||||| || ||||||||||||| || | |||||||||||| ||||||||    
T  5721685 gagttaactcacgatgagacttttaagatcgattcaattacttttcaaatcggttcaaccgatcttaaaagt 5721756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 538
Target Start/End: Complemental strand, 31726723 - 31726585
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
    |||||||| || || |||||||||||  ||||||||| |  |||||||  |||||||||||| ||||||||  |||| |||||| ||||||| || ||||    
T  31726723 agttaacttacactaacacttttaagttcggttcaatcatattttaagccggttcaaccgatcttaaaagtatcagcatgagttcactcacgctg-aaaa 31726625  T
Q  499 atgtcgagcgtaaattaactcacattgaattaagggaatg 538  Q
    |||  |||| | | |||||||||  |||||||||||||||    
T  31726624 atgctgagcatgagttaactcacgatgaattaagggaatg 31726585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 566
Target Start/End: Original strand, 31726731 - 31726802
Alignment:
Q  495 aaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagtgagaagagcaatt 566  Q
    ||||||||||||||| | ||||||||| |||||| |||| |||||| |||| |||||| |||||||||||||    
T  31726731 aaaaatgtcgagcgtgagttaactcacgttgaatgaaggaaatgagcaaaaacaaaagggagaagagcaatt 31726802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 564
Target Start/End: Original strand, 16780812 - 16780921
Alignment:
Q  454 aaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagt 553  Q
    ||||||| |||||||| || |||| |||||||||| | |||||| ||||||||| | | ||||||||  ||||||||||| |||||| |||| | ||||     
T  16780812 aaccgatcttaaaagtgcccgcgtaagttaactcatgctgaaaa-atgtcgagcatgagttaactcatgttgaattaaggaaatgagcaaaaacgaaagg 16780910  T
Q  554 gagaagagcaa 564  Q
    |||||||||||    
T  16780911 gagaagagcaa 16780921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 486
Target Start/End: Original strand, 22600648 - 22600734
Alignment:
Q  400 gttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaact 486  Q
    |||||||||| |||||| |||||||| || |||||||||||||||||  ||||||||| || |||| ||| ||| | ||||||||||    
T  22600648 gttaactcacactgacatttttaagatcgattcaattactttttaagccggttcaaccaatcttaatagtgccaacatgagttaact 22600734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 48078598 - 48078680
Alignment:
Q  416 acttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
    |||||||||| |  |||||| ||||||||||| |||||||||||| |||||||| ||| || ||||||||||  |||||||||    
T  48078598 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaaa 48078680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 468
Target Start/End: Original strand, 45773203 - 45773271
Alignment:
Q  400 gttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaag 468  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||| |  ||||||||| || |||||||    
T  45773203 gttaactcacgctgacactttttagatcggttcaatcactttttacgccggttcaaccaatcttaaaag 45773271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 399 - 486
Target Start/End: Complemental strand, 101371 - 101284
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaact 486  Q
    |||||||||| |||  ||||||| ||| | ||||||| |||||||||||  | ||||||||| ||||||||  |||||||||||||||    
T  101371 agttaactcatgctagcactttttagatcagttcaatcactttttaagtcaggtcaaccgatcttaaaagtgtcagcgtgagttaact 101284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 399 - 469
Target Start/End: Complemental strand, 11754767 - 11754697
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    ||||||||  ||||||||||||||||| ||||||||| ||||||||  | ||||||||| || ||||||||    
T  11754767 agttaactgtcgctgacacttttaagatcggttcaatcactttttatctcggttcaaccaatcttaaaagt 11754697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 469
Target Start/End: Complemental strand, 24558586 - 24558528
Alignment:
Q  412 tgacacttttaagaccggttcaattacttttt-aagttggttcaaccgattttaaaagt 469  Q
    |||||||||||||||| ||||||| | ||||| ||||||||| ||||||||||||||||    
T  24558586 tgacacttttaagaccagttcaatcatttttttaagttggtttaaccgattttaaaagt 24558528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 524 - 566
Target Start/End: Complemental strand, 44041674 - 44041632
Alignment:
Q  524 tgaattaagggaatgagaaaaatcaaaagtgagaagagcaatt 566  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  44041674 tgaattaagagaatgagcaaaatcaaaagtgagaagagcaatt 44041632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 35851906 - 35851990
Alignment:
Q  347 agaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcacgctgacacttttaagaccggtt 431  Q
    |||||||||||||||||  |||  |  ||||||||||| |||||  || |||| ||||||||| ||||||||||||||| |||||    
T  35851906 agaaaattgctcttctctctttcaaaattgctcattcccttaatccagcgtgaattaactcacactgacacttttaagatcggtt 35851990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 35852124 - 35852057
Alignment:
Q  347 agaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcacgctga 414  Q
    |||||||| ||||||||  ||| | ||||||||||||| || ||| || |||||||||||||||||||    
T  35852124 agaaaattactcttctccctttcgtttttgctcattcccttcattcagcgtgagttaactcacgctga 35852057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 487
Target Start/End: Complemental strand, 37108995 - 37108920
Alignment:
Q  412 tgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactc 487  Q
    |||||| ||| ||| |||||||||||  |||||||| |||||||| |||||||||||   ||||| ||||||||||    
T  37108995 tgacaccttttagatcggttcaattatattttaagtcggttcaactgattttaaaagcatcagcgggagttaactc 37108920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 11687825 - 11687871
Alignment:
Q  452 tcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
    ||||||||| ||||||||  ||||||||||||||||||| |||||||    
T  11687825 tcaaccgatcttaaaagtgacagcgtgagttaactcacgctgaaaaa 11687871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 429 - 487
Target Start/End: Original strand, 21346399 - 21346457
Alignment:
Q  429 gttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactc 487  Q
    ||||||| |||||||||||||||||||||||  ||||||||    ||||||||||||||    
T  21346399 gttcaatcactttttaagttggttcaaccgaccttaaaagttttggcgtgagttaactc 21346457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 22181785 - 22181708
Alignment:
Q  348 gaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagtta--actcacgctgacacttttaa 423  Q
    ||||||||| ||||||  |||||||||||||||| || ||||||||| || |||||  || ||| |||||||||||||    
T  22181785 gaaaattgcccttctcacttttgattttgctcatccccttaatttagcgtaagttaacacacacactgacacttttaa 22181708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 469
Target Start/End: Original strand, 24447908 - 24447961
Alignment:
Q  416 acttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    ||||||||||| |||||||| |||||||| || ||||||| || ||||||||||    
T  24447908 acttttaagactggttcaatcactttttatgtcggttcaatcggttttaaaagt 24447961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 28557317 - 28557284
Alignment:
Q  402 taactcacgctgacacttttaagaccggttcaat 435  Q
    |||||||||||||||||||||||| |||||||||    
T  28557317 taactcacgctgacacttttaagatcggttcaat 28557284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 31726806 - 31726741
Alignment:
Q  347 agaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcacgct 412  Q
    |||||||||||||||||  ||||| ||||||||||| | || ||| |  |||||||||||||||||    
T  31726806 agaaaattgctcttctcccttttgtttttgctcatttccttcattcaacgtgagttaactcacgct 31726741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 393 - 573
Target Start/End: Complemental strand, 35943624 - 35943445
Alignment:
Q  393 agtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgtt 492  Q
    ||||| |||||| |||| ||  ||||||||||| ||||||||||| |||||||||  |||||||||||||||| | |  |||| |||||||||||| |||    
T  35943624 agtgtaagttaattcacactagcacttttaagatcggttcaattattttttaagtcagttcaaccgattttaagaatgtcagcatgagttaactcaagtt 35943525  T
Q  493 gaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagtgagaagagcaattctctatc 573  Q
    | ||||  ||||||||| | |||||||||  | |||||||  |||||| ||||  ||||||||||| ||||||| ||||||    
T  35943524 g-aaaagcgtcgagcgtgagttaactcacgctaaattaagaaaatgagcaaaaataaaagtgagaatagcaattttctatc 35943445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 399 - 540
Target Start/End: Complemental strand, 9962997 - 9962856
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
    |||||||||||  ||||||||||||||  | |||||| |||||| ||  ||||||||||||| |||||| | | |||||||||||||||| | |||||||    
T  9962997 agttaactcacaatgacacttttaagattgattcaatcacttttcaatctggttcaaccgatcttaaaaatgctagcgtgagttaactcatgctgaaaaa 9962898  T
Q  499 atgtcgagcgtaaattaactcacattgaattaagggaatgag 540  Q
    |||||||||   | |||||||||  | |||||| ||||||||    
T  9962897 atgtcgagcacgagttaactcacgctaaattaatggaatgag 9962856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 396 - 566
Target Start/End: Complemental strand, 18398646 - 18398477
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaa 495  Q
    ||||||||||| || ||||||||||||||| ||||||| | |||||||||   |||||||||||| ||| || |  |||||||||||||||||   || |    
T  18398646 gtgagttaacttacactgacacttttaagatcggttcattcactttttaaaccggttcaaccgatcttataattttcagcgtgagttaactcagactg-a 18398548  T
Q  496 aaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagtgagaagagcaatt 566  Q
    |||||| ||||||| | ||||||||   |||||||| |||||||  |||| | |||| || ||||||||||    
T  18398547 aaaatgccgagcgtgagttaactcatgctgaattaatggaatgaacaaaaacgaaagggaaaagagcaatt 18398477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 390 - 543
Target Start/End: Original strand, 23311753 - 23311905
Alignment:
Q  390 tttagtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcac 489  Q
    ||||| ||||||||||||||| ||  | |||||||| ||||| ||||| |||||||||  |||||||| || ||||||||  || |||||||||||| ||    
T  23311753 tttagcgtgagttaactcacgttggtatttttaagatcggttaaattattttttaagtcagttcaaccaatcttaaaagtgtcaacgtgagttaacttac 23311852  T
Q  490 gttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaa 543  Q
    ||| ||||||| |||||| | | |||| | ||  ||||||||| ||||||||||    
T  23311853 gtt-aaaaaatatcgagcttgagttaatttacgctgaattaagagaatgagaaa 23311905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 349 - 446
Target Start/End: Original strand, 39333722 - 39333819
Alignment:
Q  349 aaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaag 446  Q
    |||||||||||||||  ||||| || |||||| ||| |||||| ||||||| ||||||||| || |||||||||| |  |||| ||| ||||||||||    
T  39333722 aaaattgctcttctcccttttgtttatgctcaatcccttaattcagtgtgatttaactcaccctaacacttttaaaattggtttaatcactttttaag 39333819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 454 - 566
Target Start/End: Complemental strand, 23311794 - 23311682
Alignment:
Q  454 aaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagt 553  Q
    ||||||| |||||| | ||| |||||||||||||||| | |||||||  ||| | | || |||||||  |||||||||||||||||| |||| | ||||     
T  23311794 aaccgatcttaaaaataccaacgtgagttaactcacgctaaaaaaataccgaacatgaagtaactcatgttgaattaagggaatgagcaaaaacgaaaga 23311695  T
Q  554 gagaagagcaatt 566  Q
    ||||||| |||||    
T  23311694 gagaagaacaatt 23311682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 14122644 - 14122593
Alignment:
Q  348 gaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtga 399  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||| ||||    
T  14122644 gaaaattgctcttctcattttttattttgctcattcatttaatttagagtga 14122593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 43101204 - 43101285
Alignment:
Q  416 acttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaa 498  Q
    |||||||||| ||||| ||| | |||||||||||| |||| |||||||||||||  ||| |||||| |||||| |||||||||    
T  43101204 acttttaagatcggtttaataa-tttttaagttgggtcaatcgattttaaaagtgtcagtgtgagtaaactcatgttgaaaaa 43101285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 566
Target Start/End: Complemental strand, 35631548 - 35631398
Alignment:
Q  415 cacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaatt 514  Q
    ||||||||||| ||||| |||  | ||||||||  | | ||||||| ||||||||  ||||| ||||||| ||||| ||  ||||| ||||| || ||||    
T  35631548 cacttttaagatcggtttaatccccttttaagtcagctgaaccgatcttaaaagtatcagcgggagttaattcacgctg--aaaatatcgagtgtgaatt 35631451  T
Q  515 aactcacattgaa-ttaagggaatgagaaaaatcaaaagtgagaagagcaatt 566  Q
    |||||||| |||| |||||||||| || ||  ||| || ||||||||||||||    
T  35631450 aactcacactgaacttaagggaataagcaatttcacaaatgagaagagcaatt 35631398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 397 - 537
Target Start/End: Original strand, 896068 - 896207
Alignment:
Q  397 tgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaa 496  Q
    |||||||||| | |||||| ||| ||| |  |||||||| |||||||||   |||||||  ||| |||||||||  ||||||||||||||||||  | ||    
T  896068 tgagttaacttatgctgacgcttgtaaaattggttcaatcactttttaaaccggttcaattgatcttaaaagtcttagcgtgagttaactcacgccg-aa 896166  T
Q  497 aaatgtcgagcgtaaattaactcacattgaattaagggaat 537  Q
    ||||||||||||  | ||||||  |||||| ||||| ||||    
T  896167 aaatgtcgagcgagagttaacttccattgagttaagagaat 896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 558
Target Start/End: Original strand, 18398611 - 18398714
Alignment:
Q  454 aaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagt 553  Q
    ||||||| ||||||||  ||| || ||||||||||||||| |||||| |||||||| | ||||||||   |||||||||| |||||| |||| | ||||     
T  18398611 aaccgatcttaaaagtgtcagtgtaagttaactcacgttg-aaaaatatcgagcgtgagttaactcatgctgaattaaggaaatgaggaaaaacgaaagg 18398709  T
Q  554 gagaa 558  Q
    |||||    
T  18398710 gagaa 18398714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 486
Target Start/End: Complemental strand, 26278612 - 26278500
Alignment:
Q  374 ttgctcattcctttaatttagtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtccca 473  Q
    ||||||||||| || ||  | || ||||||| ||||||| | |||||| ||| |||||| | ||||||||||||||| ||||  ||| ||||||||  ||    
T  26278612 ttgctcattcccttgatccaatgggagttaattcacgctcatactttttagatcggttctactactttttaagttggatcaattgatcttaaaagtgtca 26278513  T
Q  474 gcgtgagttaact 486  Q
    |||| ||||||||    
T  26278512 gcgtaagttaact 26278500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 14106031 - 14105980
Alignment:
Q  418 ttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||| ||||||||| ||||||||||||||||  |||||| ||||||||    
T  14106031 ttttaagatcggttcaatcactttttaagttggtttgaccgatcttaaaagt 14105980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 454 - 540
Target Start/End: Complemental strand, 43101219 - 43101134
Alignment:
Q  454 aaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgag 540  Q
    ||||||| |||||||| || |||  ||||||| || | ||||||| |||||||||| | ||||||||| ||||||||||| ||||||    
T  43101219 aaccgatcttaaaagtaccggcgcaagttaacgcatgctgaaaaa-tgtcgagcgtgagttaactcacgttgaattaaggtaatgag 43101134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 467
Target Start/End: Original strand, 35895025 - 35895090
Alignment:
Q  402 taactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaa 467  Q
    ||||| |||||||||||||| ||| | ||| ||||||||||||||| || |||| |||| ||||||    
T  35895025 taacttacgctgacactttttagatcagttaaattactttttaagtcgggtcaatcgatcttaaaa 35895090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 35943448 - 35943513
Alignment:
Q  347 agaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcacgct 412  Q
    ||||||||||| |||||  ||||  |||||||||||   ||||||||| |||||||||||||||||    
T  35943448 agaaaattgctattctcacttttatttttgctcattttcttaatttagcgtgagttaactcacgct 35943513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 397 - 497
Target Start/End: Original strand, 16316 - 16417
Alignment:
Q  397 tgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgat-tttaaaagtcccagcgtgagttaactcacgttgaa 495  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||| | |||||||||||| || ||||||  ||||  ||||||||||||||||||    
T  16316 tgagttacttcacgctgtcacttttaagaccggttcaattactttttaaatcggttcaaccgatcttaaaaagtatcagcaagagttaactcacgttgaa 16415  T
Q  496 aa 497  Q
    ||    
T  16416 aa 16417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 348 - 452
Target Start/End: Complemental strand, 40422046 - 40421942
Alignment:
Q  348 gaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaagt 447  Q
    ||||||||||||||||  ||| | ||||||||||||| ||||||  | |||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  40422046 gaaaattgctcttctccctttcgtttttgctcattcccttaattcggcgtgagttaactcacactgacacttttaagattagttcaatcactttttaagt 40421947  T
Q  448 tggtt 452  Q
    |||||    
T  40421946 tggtt 40421942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 396 - 539
Target Start/End: Complemental strand, 40423398 - 40423256
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaa 495  Q
    |||| |||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||  || ||||||||  |||| ||||||||||  ||||| |    
T  40423398 gtgaattaactcacgctgacaattttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaagtgtcagcatgagttaacttccgttg-a 40423300  T
Q  496 aaaatgtcgagcgtaaattaactcacattgaattaagggaatga 539  Q
    |||||||| ||||| | |||||  ||  ||||||||| ||||||    
T  40423299 aaaatgtcaagcgtgagttaacatacgctgaattaagagaatga 40423256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 454 - 566
Target Start/End: Complemental strand, 43115627 - 43115516
Alignment:
Q  454 aaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagt 553  Q
    ||||||| ||||||||  ||| ||||||||||||||| ||||||| |||||| | ||| |||||||||  | ||||||||||| ||  ||||||||||||    
T  43115627 aaccgatcttaaaagtgtcagtgtgagttaactcacgctgaaaaa-tgtcgaacttaagttaactcacgctaaattaagggaaagaacaaaatcaaaagt 43115529  T
Q  554 gagaagagcaatt 566  Q
    |||||||||||||    
T  43115528 gagaagagcaatt 43115516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 396 - 489
Target Start/End: Complemental strand, 37398035 - 37397942
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcac 489  Q
    ||||||||||||| ||| ||| |||||||| ||||||||| |||||||||||  |||||||| || |||||  | |||||||||||||||||||    
T  37398035 gtgagttaactcaggctaacatttttaagatcggttcaatcactttttaagtcagttcaaccaatcttaaacattccagcgtgagttaactcac 37397942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 43115592 - 43115653
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaacc 457  Q
    |||||||||||||| ||||||||||||||| ||||||||| | ||||||||| |||||||||    
T  43115592 gtgagttaactcacactgacacttttaagatcggttcaataattttttaagtcggttcaacc 43115653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 487
Target Start/End: Original strand, 5961798 - 5961870
Alignment:
Q  415 cacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactc 487  Q
    ||||||||||| | ||||||| |||||||||||||| ||||||||| ||||||   ||||| |||||||||||    
T  5961798 cacttttaagatcagttcaatcactttttaagttggctcaaccgatcttaaaaacaccagcatgagttaactc 5961870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 469
Target Start/End: Complemental strand, 25844341 - 25844269
Alignment:
Q  397 tgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||||||| ||||||||||||||||  | ||||||  |||||||||  |||||||||||| ||||||||    
T  25844341 tgagttaactcatgctgacacttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaagt 25844269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 347 - 406
Target Start/End: Original strand, 43115512 - 43115571
Alignment:
Q  347 agaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaact 406  Q
    |||||||||||||||||  ||||||||||| || |||| ||||||||| |||||||||||    
T  43115512 agaaaattgctcttctcacttttgattttgttctttcccttaatttagcgtgagttaact 43115571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 3741710 - 3741764
Alignment:
Q  413 gacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaa 467  Q
    ||||| ||||||| |||| |||| | |||||||||||||||||||||||||||||    
T  3741710 gacacatttaagatcggtgcaatcattttttaagttggttcaaccgattttaaaa 3741764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 9954523 - 9954593
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||||| |||||||||||| ||| |  |||||||| |||||||||||| |||| |||| ||||||||    
T  9954523 agttaactcaagctgacactttttagatcaattcaattattttttaagttgggtcaatcgatcttaaaagt 9954593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 25844538 - 25844477
Alignment:
Q  348 gaaaattgctcttctcgtttttgattttgctcattcctttaatttagtgtgagttaactcac 409  Q
    ||||||||||||||||  ||| | ||||||||||||| ||||||||  ||||||||||||||    
T  25844538 gaaaattgctcttctccctttagtttttgctcattcccttaatttaaagtgagttaactcac 25844477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 469
Target Start/End: Complemental strand, 79590 - 79526
Alignment:
Q  405 ctcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    ||||| ||||||||||| ||| ||||||||| ||||||||||| || ||||| ||| ||||||||    
T  79590 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagt 79526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 469
Target Start/End: Complemental strand, 19689323 - 19689267
Alignment:
Q  413 gacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||||||||  |||||||| ||||||||||||| || |||| |||||||||||    
T  19689323 gacacttttaagattggttcaatcactttttaagttgatttaaccaattttaaaagt 19689267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 566
Target Start/End: Original strand, 7379544 - 7379615
Alignment:
Q  495 aaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagtgagaagagcaatt 566  Q
    ||||||||||||||| |||||||||||  ||||||||  ||||||  |||||||||||| | |||| |||||    
T  7379544 aaaaatgtcgagcgtgaattaactcacgctgaattaaaagaatgaacaaaatcaaaagtaaaaagaacaatt 7379615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 486
Target Start/End: Complemental strand, 24673098 - 24673011
Alignment:
Q  399 agttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaact 486  Q
    |||||||||||||||   ||||| ||| | ||||||| |||||||| || || |||||| || |||||||| ||| ||||||||||||    
T  24673098 agttaactcacgctggtgctttttagatcagttcaatcactttttatgtcgggtcaaccaatcttaaaagtgccaacgtgagttaact 24673011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 566
Target Start/End: Original strand, 25844464 - 25844535
Alignment:
Q  495 aaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagtgagaagagcaatt 566  Q
    |||||||| ||| || | ||||||||| || ||||||||||||||| |||| | |||| |||||||||||||    
T  25844464 aaaaatgttgagtgtgagttaactcactttaaattaagggaatgagcaaaaactaaagggagaagagcaatt 25844535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 11548225 - 11548151
Alignment:
Q  412 tgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaact 486  Q
    |||||||||||||| ||||||| |  |||||||||| ||||| |||||| ||||||||  |||||  ||||||||    
T  11548225 tgacacttttaagatcggttcattcgctttttaagtcggttcgaccgatgttaaaagtgtcagcggcagttaact 11548151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 566
Target Start/End: Original strand, 37398065 - 37398107
Alignment:
Q  524 tgaattaagggaatgagaaaaatcaaaagtgagaagagcaatt 566  Q
    ||||||| ||||||||| |||||||||||| ||||||||||||    
T  37398065 tgaattatgggaatgagcaaaatcaaaagtaagaagagcaatt 37398107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 396 - 516
Target Start/End: Original strand, 34062648 - 34062767
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaa 495  Q
    |||||| ||||||||||||||||||||| | ||||||||| ||||||||||| | |||||| |||||||||| |  |||  |||||||||||||| | ||    
T  34062648 gtgagtgaactcacgctgacacttttaaaatcggttcaatcactttttaagtcgtttcaactgattttaaaaatatcagtttgagttaactcacgat-aa 34062746  T
Q  496 aaaatgtcgagcgtaaattaa 516  Q
    ||||||| |||||| ||||||    
T  34062747 aaaatgttgagcgtgaattaa 34062767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 431 - 539
Target Start/End: Complemental strand, 34123222 - 34123115
Alignment:
Q  431 tcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaatta 530  Q
    ||||| |||||||||| ||||||||||||||||||||||  |||||||||||||||  || || ||||||||||||||| | ||||| ||| || |||||    
T  34123222 tcaatcactttttaagctggttcaaccgattttaaaagtgtcagcgtgagttaacttccgctg-aaaaatgtcgagcgtgagttaacccacgttaaatta 34123124  T
Q  531 agggaatga 539  Q
    | |||||||    
T  34123123 aaggaatga 34123115  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 560
Target Start/End: Complemental strand, 24603125 - 24602983
Alignment:
Q  415 cacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaatt 514  Q
    ||||||||||| ||||||| | | |||||||| ||||||||||||| ||||||||   | | |||||||||||||||   |||||||||||| || | ||    
T  24603125 cacttttaagatcggttcactaattttttaagctggttcaaccgatcttaaaagtgttatcatgagttaactcacgt--gaaaaatgtcgagtgtgagtt 24603028  T
Q  515 aactcacattgaattaagggaatgagaaaaatcaaaagtgagaaga 560  Q
    |||||||  | |||||| ||||||||||||| |||||| |||||||    
T  24603027 aactcacgctcaattaaaggaatgagaaaaa-caaaagggagaaga 24602983  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 393 - 566
Target Start/End: Original strand, 25484943 - 25485115
Alignment:
Q  393 agtgtgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgtt 492  Q
    |||||||||||| | |||||| ||||||||||| |  |||||| ||||||||||    ||||| |||| ||||||||  ||||||||||||||||||| |    
T  25484943 agtgtgagttaatttacgctggcacttttaagatcaattcaatcactttttaagccaattcaaacgatcttaaaagtggcagcgtgagttaactcacgct 25485042  T
Q  493 gaaaaaatgtcgagcgtaaattaactcacattgaattaagggaatgagaaaaatcaaaagtgagaagagcaatt 566  Q
    |  |||||||||| ||| | |||||||   | ||||||| |||||||| | |||  ||| ||||||||| ||||    
T  25485043 g-gaaaatgtcgaacgtgagttaactcgtgtagaattaaaggaatgagcataattcaaaatgagaagagtaatt 25485115  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 429 - 484
Target Start/End: Complemental strand, 32191199 - 32191144
Alignment:
Q  429 gttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaa 484  Q
    ||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||    
T  32191199 gttcaatcattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaa 32191144  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 501
Target Start/End: Original strand, 8041143 - 8041227
Alignment:
Q  418 ttttaagaccggttcaattactttttaagttggttcaaccg-attttaaaagtcccagcgtgagttaactcacgttgaaaaaatg 501  Q
    |||||||| ||||||||| | |||||||||||||||||||| || ||||||||   |||||||||||| ||||  ||||||||||    
T  8041143 ttttaagatcggttcaatcaatttttaagttggttcaaccgaatcttaaaagttttagcgtgagttaattcacactgaaaaaatg 8041227  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 437 - 566
Target Start/End: Original strand, 9450237 - 9450365
Alignment:
Q  437 actttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaa-ttaaggga 535  Q
    ||||||||||| |||||||||||| |||||||| ||||||  | |||| || || ||  |||||| ||||| | | ||| |||||| |||| ||||||||    
T  9450237 actttttaagtcggttcaaccgatcttaaaagtgccagcggaaattaattcccgctg--aaaatgccgagcctgagttagctcacactgaatttaaggga 9450334  T
Q  536 atgagaaaaatcaaaagtgagaagagcaatt 566  Q
    ||||| ||  ||| |||||||||||||||||    
T  9450335 atgagcaatttcataagtgagaagagcaatt 9450365  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 518
Target Start/End: Complemental strand, 31847442 - 31847369
Alignment:
Q  444 aagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaact 518  Q
    |||| ||||| |||||| ||||||||  ||||| ||||||||||||| || ||||||||||||||||| ||||||    
T  31847442 aagtcggttcgaccgatcttaaaagtgtcagcgagagttaactcacgctg-aaaaatgtcgagcgtaagttaact 31847369  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 467
Target Start/End: Complemental strand, 768357 - 768300
Alignment:
Q  410 gctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaa 467  Q
    |||||||||||||||| | ||||||| ||||||||||| ||||||| | |||||||||    
T  768357 gctgacacttttaagatcagttcaatcactttttaagtcggttcaatcaattttaaaa 768300  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 39126995 - 39126963
Alignment:
Q  396 gtgagttaactcacgctgacacttttaagaccg 428  Q
    |||||||||||||||||||||||||||||||||    
T  39126995 gtgagttaactcacgctgacacttttaagaccg 39126963  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 34062683 - 34062601
Alignment:
Q  454 aaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaaattaactcacattgaattaagggaat 537  Q
    ||||||||||||||||  ||||||||||| ||||||| || |||||||| |||||| | |||||||| |  |||||||| ||||    
T  34062683 aaccgattttaaaagtgtcagcgtgagttcactcacgctg-aaaaatgttgagcgtgagttaactcatacagaattaagagaat 34062601  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 487
Target Start/End: Complemental strand, 17916261 - 17916172
Alignment:
Q  398 gagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactc 487  Q
    |||||||||| || |  |||||||||   ||||| ||| ||||||||||| ||||||| |||| ||||||||  ||||| ||||||||||    
T  17916261 gagttaactcccgttagcacttttaaattcggtttaatcactttttaagtcggttcaatcgatcttaaaagtgtcagcgagagttaactc 17916172  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 427 - 511
Target Start/End: Complemental strand, 2608444 - 2608361
Alignment:
Q  427 cggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgtaa 511  Q
    ||||||||| ||||||||||||||||||||| ||||||||| | | |||||||||||| ||||| || |||||| ||||||||||    
T  2608444 cggttcaatcactttttaagttggttcaaccaattttaaaaatgctagcgtgagttaaatcacgctg-aaaaatatcgagcgtaa 2608361  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 469
Target Start/End: Original strand, 22682572 - 22682632
Alignment:
Q  410 gctgacacttttaaga-ccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||||||||||| || ||||||| | |||||||||||||||||||||| ||||||||    
T  22682572 gctgacacttttaagatcctgttcaatcattttttaagttggttcaaccgatcttaaaagt 22682632  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 398 - 469
Target Start/End: Original strand, 32820790 - 32820861
Alignment:
Q  398 gagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||||| | |||||||| |||||| |||||||   |||||||||||||||||||| ||| ||||||||    
T  32820790 gagttaactcccactgacactattaagatcggttcagacactttttaagttggttcaactgatgttaaaagt 32820861  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 397 - 469
Target Start/End: Original strand, 33617651 - 33617723
Alignment:
Q  397 tgagttaactcacgctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagt 469  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||  |||   ||||||| |||| ||||||||    
T  33617651 tgagttaactcacgctgacatttttaagatcggttcaatcacttgctaatccggttcaatcgatcttaaaagt 33617723  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 520 - 570
Target Start/End: Original strand, 1944868 - 1944918
Alignment:
Q  520 acattgaattaagggaatgagaaaaatcaaaagtgagaagagcaattctct 570  Q
    ||||||||||||||||||||  ||||||||||| || |||||| |||||||    
T  1944868 acattgaattaagggaatgactaaaatcaaaagggaaaagagcgattctct 1944918  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 470
Target Start/End: Complemental strand, 24882003 - 24881946
Alignment:
Q  413 gacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtc 470  Q
    ||||| ||||||| | ||||||| ||||||||| ||| |||||||||||| |||||||    
T  24882003 gacacgtttaagagcagttcaatcactttttaaattgattcaaccgatttaaaaagtc 24881946  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 540
Target Start/End: Complemental strand, 31466 - 31337
Alignment:
Q  410 gctgacacttttaagaccggttcaattactttttaagttggttcaaccgattttaaaagtcccagcgtgagttaactcacgttgaaaaaatgtcgagcgt 509  Q
    |||| ||||||||||| ||| ||||| |||||||||| |||||||||| || |||||| |    | ||||||||||||||| || ||||||| ||| |||    
T  31466 gctggcacttttaagatcggctcaatcactttttaagctggttcaaccaatcttaaaaatgtatgtgtgagttaactcacgctg-aaaaatgccgaacgt 31368  T
Q  510 aaattaactcacattgaattaagggaatgag 540  Q
     | ||||||||   ||||||||| |||||||    
T  31367 gagttaactcatgctgaattaagagaatgag 31337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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