View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13796_high_4 (Length: 304)

Name: NF13796_high_4
Description: NF13796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13796_high_4
NF13796_high_4
[»] chr6 (1 HSPs)
chr6 (1-293)||(4322253-4322547)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 4322547 - 4322253
Alignment:
Q  1 gaatctcttctttgttgtctttgtttcacatgcaagcaaagaccctttaaagaaccaccaacaaaatttgaacttgagtgttttaaattgatgtggttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4322547 gaatctcttctttgttgtctttgtttcacatgcaagcaaagaccctttaaagaaccaccaacaaaatttgaacttgagtgttttaaattgatgtggttct 4322448  T
Q  101 tcaaaagtgtggaatttggtgaagaaacagcaattgctgctaccatttttgtt-acttttttg--taattgatgttgtcataaactaatgtactggtttt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |  ||||||||||||||||||||||||||||||||    
T  4322447 tcaaaagtgtggaatttggtgaagaaacagcaattgctgctaccatttttgtttactttttttgtttgttgatgttgtcataaactaatgtactggtttt 4322348  T
Q  198 gttgttgtaggtacat--gaagtgaaaaacactattggatatggttttgacacgtggaatattggtcttaggattttgtccaacaaggatggttgtga 293  Q
    |||||   ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4322347 gttgt---aggtacatatgaagtgaaaaacactattggatatggttttgacacgtggaatattggtcttaggattttgtccaacaaggatgtttgtga 4322253  T

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