View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13796_low_3 (Length: 663)
Name: NF13796_low_3
Description: NF13796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13796_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 129 - 647
Target Start/End: Complemental strand, 36328742 - 36328224
Alignment:
| Q |
129 |
aaatagcatgtaatgtggaggcagagtgttccacagaaaaatgaagcttatatggaatttgccgtctttataagagaagattcggagcatcagtagaatg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36328742 |
aaatagcatgtaatgtggaggcagagtgttccatagaaaaatgaagcttatatggaatttgccgactttataagagaagattcggagcatcagtagaatg |
36328643 |
T |
|
| Q |
229 |
agtacgtacatgtgtaccaagtggctgtatcccatgagnnnnnnnnnnnnnnnnncttccaaataagccacttttatgattaactaccatttatattgta |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36328642 |
agtacgtacatgtgtaccaagtggctgtatcccatgagttttttttgtctttttttttccaaataagccacttttatgattaactaccatttatattgta |
36328543 |
T |
|
| Q |
329 |
attgtatgatttactcttaaaagtaagtttgatataaaaataatgtaaaattttcaaccccaacacatgatgtgtgttctggtttcacggcagggatagt |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36328542 |
attgtatgatttactcttaaaagtaagtttgatataaaaataatgtaaaattttcaaccccaacacatggtgtgtgttctggtttcacggcagggatagt |
36328443 |
T |
|
| Q |
429 |
gagccaaaattgatttcatccgcataaatttatttagacaggtcaattgaaaatgaatttatccttaaattgattttaacttagtattaaaatttgcatc |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36328442 |
gagccaaaattgatttcatccgcataaatttatttagacaggtcaattgaaaatgaatttatccttaaattgattttaacttagtattaaaatttgcatt |
36328343 |
T |
|
| Q |
529 |
gcagttttcaaccccaatcataattattacattcaattttattattcaacaaacttttgccgaacataaatcacttcaattacttttaattataagatca |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36328342 |
gcagttttcaaccccaatcataattattacattcaattttattattcaacaaacttttgccgaacataaatcacttcaattacttttaactataagatca |
36328243 |
T |
|
| Q |
629 |
atttatttcacggcataac |
647 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
36328242 |
atttatttcacggcataac |
36328224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 36328873 - 36328807
Alignment:
| Q |
17 |
aagaaagagaggaacaagtaaactacaatgccaatataaaaactaatctccgccctccgcccctccc |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36328873 |
aagaaagagaggaacaagtaaactacaatgccaatataaaaactaatcttcgccctccgcccctccc |
36328807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University