View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13796_low_4 (Length: 555)
Name: NF13796_low_4
Description: NF13796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13796_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Original strand, 48497593 - 48498132
Alignment:
| Q |
1 |
tctattatataataagttaaatggtgtttatcctctctcacttaagagagatttgatttacccctaaatttaaatattatttggtttttgagtcccacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
48497593 |
tctattatataataagttaaatggtgtttatcctctctcacttaagagagatttggtttacccctaaatttaaatattatttggtttctgactcccacca |
48497692 |
T |
|
| Q |
101 |
aatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaacaaattaaaaga-gtatgctaaatagtgtgtgttaaaatatttgttattaac |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | || ||| |||| ||||| | |||||| ||| | |
|
|
| T |
48497693 |
aatcatgtggatcccacgtaaatttagtggatttcatgtgaattttaacaaatcaaaaaaagtgtgc--------gtgtattaaattgtttgttgttagc |
48497784 |
T |
|
| Q |
200 |
atttctcattaaactagacactaacctccctcttattttttgaacaaactaacc--tctctctcttattattatcaaattgacaatcacctccattctaa |
297 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48497785 |
atttctctttaaactagacactaacctccctcttattttttgaccaaactaacccctctctctcttattattatcaaattgacaatcacctccattctaa |
48497884 |
T |
|
| Q |
298 |
cttaacaccattaaatttcctaactctctcactttcgctcacactaatattaattattttacttcattgttcaatatttttctctccgaggttgtattat |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48497885 |
cttaacaccattaaatttcctaactctctcactttcgctcacactaatattaattattttacttcattgttcaatatttttctctccgaagttgtattat |
48497984 |
T |
|
| Q |
398 |
aagtttcccttttcttggtgtatgttcattctagcatgttgggtggagagagagnnnnnnnncagaaaaacgaactgaactacttatcgaaccgaactat |
497 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||| ||||||||| |||| || |
|
|
| T |
48497985 |
aagtttcccttttcttggtgtaagttcattctagcatgttgggtggagagagaaaaaaaata---aaaaacgaaccgaaccgtttatcgaactgaaccat |
48498081 |
T |
|
| Q |
498 |
tattaacaattttagaaatgaactgaaaaaactcagtttgatgtagttttc |
548 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| |||||| || ||||| |
|
|
| T |
48498082 |
tattaacaattctaaaaatgaactgaaaaaactcgatttgatataattttc |
48498132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 24516605 - 24516661
Alignment:
| Q |
92 |
gtcccaccaaatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaa |
148 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
24516605 |
gtcccaccaaatcatgtggattccatctaaatttagtggatcccatgtgaattttaa |
24516661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 23317958 - 23318023
Alignment:
| Q |
92 |
gtcccaccaaatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaacaaattaaa |
157 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
23317958 |
gtcccaccaaatcatgtgggtcccatataaatttagtggatctcatgtgaattttaaccaattaaa |
23318023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 45563116 - 45563172
Alignment:
| Q |
93 |
tcccaccaaatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaac |
149 |
Q |
| |
|
|||||||||||||||| |||| || ||||||| |||||| |||||| ||||||||| |
|
|
| T |
45563116 |
tcccaccaaatcatgttgatctcatataaatttggtggatctcatgtaaattttaac |
45563172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 25545311 - 25545215
Alignment:
| Q |
89 |
tgagtcccaccaaatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaacaaattaaaagagtatgctaaatagtgtgtgttaaaat |
186 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||| | |||||||||||||||| || | ||||||| || | || | ||||||||||||| |
|
|
| T |
25545311 |
tgagtcccaccaaatcatgtcggtcccatataaatttagtgggtctcatgtgaattttaaccaa-tcaaagagtgtgttgaaaaatgtgtgttaaaat |
25545215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 40530019 - 40530087
Alignment:
| Q |
89 |
tgagtcccaccaaatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaacaaattaaa |
157 |
Q |
| |
|
|||||| ||||||||||||| | || | |||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
40530019 |
tgagtcacaccaaatcatgtgggtctaatataaatttagtggatctcctgtgaattttaacaaattaaa |
40530087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 42420066 - 42420123
Alignment:
| Q |
92 |
gtcccaccaaatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaac |
149 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||| |||||||| ||||||| |
|
|
| T |
42420066 |
gtcccaccaaatcatgtggatcccatataaatttgatggatctcatgtgagttttaac |
42420123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 40763461 - 40763392
Alignment:
| Q |
89 |
tgagtcccaccaaatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaacaaattaaaa |
158 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||| ||||| |||||||||||||||| ||| |||| |
|
|
| T |
40763461 |
tgagttccaccaaatcatgtggatcccatataaatttgatggatctcatgtgaattttaaccaataaaaa |
40763392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 45332629 - 45332569
Alignment:
| Q |
97 |
accaaatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaacaaattaaa |
157 |
Q |
| |
|
|||||||||||| | ||||| ||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
45332629 |
accaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaa |
45332569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 1469828 - 1469764
Alignment:
| Q |
93 |
tcccaccaaatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaacaaattaaa |
157 |
Q |
| |
|
|||||| ||||||||| | ||||| ||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
1469828 |
tcccacaaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaa |
1469764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 2247668 - 2247568
Alignment:
| Q |
93 |
tcccaccaaatcatgtagatcccacgtaaatttagtggatttcatgtgaattttaacaaattaaa-agagtatgctaaatagtgtgtgttaaaatatttg |
191 |
Q |
| |
|
|||||||||||||||| | || || ||||||| |||||| || |||||||||||| ||||||| ||||| || | || ||||||||||||||||| || |
|
|
| T |
2247668 |
tcccaccaaatcatgtgggtcgcatataaattt-gtggatctcgtgtgaattttaatcaattaaagagagtgtgttgaaaagtgtgtgttaaaatatgtg |
2247570 |
T |
|
| Q |
192 |
tt |
193 |
Q |
| |
|
|| |
|
|
| T |
2247569 |
tt |
2247568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 7403174 - 7403234
Alignment:
| Q |
134 |
tcatgtgaattttaacaaattaaa-agagtatgctaaatagtgtgtgttaaaatatttgtt |
193 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||| || | |||||||||||||||||||| |||| |
|
|
| T |
7403174 |
tcatgtgaattttaaccaatcaaagagagtgtgttgaatagtgtgtgttaaaatatgtgtt |
7403234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University