View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13797_high_16 (Length: 234)
Name: NF13797_high_16
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 31698350 - 31698578
Alignment:
| Q |
2 |
atttcacgtgcccctttcttctagcattcccatctttcttctctgttcacaaacacatagatccaccttctcctcttcctcttctctttatggccttact |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31698350 |
atttcacgtgcccctttcttctaacattctcatctttcttctctgttcacaaacacacagatccaccttctcctcttcctcttctctttctggccttact |
31698449 |
T |
|
| Q |
102 |
gccgccgtcgacgccgtggggatctgggagtcacatctgagtgtttatgcgttgtggtggcgagatgagtgaatgacggaggagacgagtctgtgttggt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31698450 |
gccgccgtcgacgccgtggggatctgggagtcacatctgagtgtttatgcgttgtggtggcgagatgagtgaatgacggaggagacgagtctgtgttggt |
31698549 |
T |
|
| Q |
202 |
cagatctgaaacgctcatagtggtggtgg |
230 |
Q |
| |
|
||| |||||||| |||||||||||||||| |
|
|
| T |
31698550 |
cagttctgaaacactcatagtggtggtgg |
31698578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 8726170 - 8725942
Alignment:
| Q |
2 |
atttcacgtgcccctttcttctagcattcccatctttcttctctgttcacaaacacatagatccaccttctcctcttcctcttctctttatggccttact |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8726170 |
atttcacgtgcccctttcttctaacattctcatctctcttctctgttcacaaacacacagatccaccttctcctcttcctcttctctttctggccttact |
8726071 |
T |
|
| Q |
102 |
gccgccgtcgacgccgtggggatctgggagtcacatctgagtgtttatgcgttgtggtggcgagatgagtgaatgacggaggagacgagtctgtgttggt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8726070 |
gccgccgtcgacgccgtggggatctgggagtcacatctgagtgtttatgcgttgtggtagcgagatgagtgaatgacagaggagacgagtctgtgttggt |
8725971 |
T |
|
| Q |
202 |
cagatctgaaacgctcatagtggtggtgg |
230 |
Q |
| |
|
|||||||||||||||| || ||||||||| |
|
|
| T |
8725970 |
cagatctgaaacgctcgtaatggtggtgg |
8725942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 34279576 - 34279361
Alignment:
| Q |
2 |
atttcacgtgcccctttcttctagcattcccatctttcttctctgttcacaaacacatagatccaccttctcctcttcctcttctctttatggccttact |
101 |
Q |
| |
|
||||||| ||||||| ||||||| ||| | ||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
34279576 |
atttcacatgcccctctcttctaacatactcatctctcttctctattcacaaacacacaaatccaccttctcctcttcctcttctctttctagccttact |
34279477 |
T |
|
| Q |
102 |
gccgccgtcgacgccgtggggatctgggagtcacatctgagtgtttatgcgttgtggtggcgagatgagtgaatgacggaggagacgagtctgtgttggt |
201 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34279476 |
gctgccgtcgacgccgtgggga-------------tctgagtgtttatgcattgtggtggcgggatgcgtgaatgacggaggagacgagtctgtgttggt |
34279390 |
T |
|
| Q |
202 |
cagatctgaaacgctcatagtggtggtgg |
230 |
Q |
| |
|
||||||||||| |||| |||||||||||| |
|
|
| T |
34279389 |
cagatctgaaatgctcgtagtggtggtgg |
34279361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University