View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13797_high_18 (Length: 211)
Name: NF13797_high_18
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_high_18 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 34950 - 34871
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact |
98 |
Q |
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| T |
34950 |
aactgggggtgttcattccttgaagcatgaaaacaacaaaggctatgaaaggtgactttttatgatctaaatgaaatact |
34871 |
T |
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Target: scaffold0003; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 41620 - 41541
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact |
98 |
Q |
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| T |
41620 |
aactgatggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact |
41541 |
T |
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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 27445738 - 27445817
Alignment:
| Q |
19 |
aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact |
98 |
Q |
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| T |
27445738 |
aactgatggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact |
27445817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 20909274 - 20909203
Alignment:
| Q |
5 |
actcttgctataccaactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgacttt |
77 |
Q |
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| T |
20909274 |
actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aatataaaaggtgacttt |
20909203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 20923722 - 20923651
Alignment:
| Q |
5 |
actcttgctataccaactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgacttt |
77 |
Q |
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| T |
20923722 |
actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aatataaaaggtgacttt |
20923651 |
T |
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Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 42312388 - 42312276
Alignment:
| Q |
5 |
actcttgctataccaactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagt |
104 |
Q |
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| T |
42312388 |
actcttgctggacaaactgggggtgttcattcattgaagcaggaaaagaacaaaaa-tataaaaggtgactttctctgatgtagatgaaatactatgagc |
42312290 |
T |
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| Q |
105 |
gaacttatacatgt |
118 |
Q |
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| T |
42312289 |
gaaattatacatgt |
42312276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 15580733 - 15580653
Alignment:
| Q |
5 |
actcttgctataccaactgagggtgttcattccttgaagcaggaaaa-caacaaaggctataaaaggtgactttttatgat |
84 |
Q |
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| T |
15580733 |
actcttgctagattaactggggttgttctttcattaaagcaggaaaagcaacaaaggctacaaaaggtgactttttctgat |
15580653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 47247045 - 47247137
Alignment:
| Q |
25 |
gggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagtgaacttatacatgt |
118 |
Q |
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| T |
47247045 |
gggtgttcattcattgaagcaggaaaacaacaaaaa-tataaaaggtgactttctatgatgtagatgaaatactataagcgaaattatacatgt |
47247137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 41326172 - 41326063
Alignment:
| Q |
5 |
actcttgctataccaactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagt |
104 |
Q |
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| T |
41326172 |
actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aaaataaaaggtgactttctatgatgtagatgaaaaactatgagc |
41326074 |
T |
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| Q |
105 |
gaacttataca |
115 |
Q |
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| T |
41326073 |
gaaattataca |
41326063 |
T |
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