View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13797_high_4 (Length: 509)
Name: NF13797_high_4
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 2 - 493
Target Start/End: Original strand, 10877778 - 10878257
Alignment:
| Q |
2 |
atctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtggaacttaatttcgtcttctcccctannnnnnnnnncttcttcctcttacct |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |
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| T |
10877778 |
atctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtagaacttaatttcgtcttctcccctatttttttttc--tcttccttttacct |
10877875 |
T |
|
| Q |
102 |
cgttagattgtaacactaccnnnnnnnnnnnnncttattcttctataaatgatttgggctgtatagtgcgacaatcgaaagatcaaattaaataatataa |
201 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10877876 |
cgttagattgtaacactaccaaaaaa----------aaacttctataaatgatttgggctgtatagtgcgacaatcgaaagatcaaattaaataatataa |
10877965 |
T |
|
| Q |
202 |
gtgaaacatttttaagtaactctaaaagaagtcagatcgtctgcaccctttcgtgcagatgtnnnnnnncaaaattaaattaaattaatataccatcatc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10877966 |
gtgaaacatttttaagtaactctaaaagaagtcagatcgtctgcaccctttcgtgcagatgtaaaaaaacaaaattaaattaaattaatataccatcatc |
10878065 |
T |
|
| Q |
302 |
taaagggaaccacaaaatcaactgacgttaaatatccatttttgttcggatatttttcttaacaaatttacagcaacgcagttatttagaagtttaattt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878066 |
taaagggaaccacaaaatcaactgacgttaaatatccatttttgttcggatatttttcttaacaaatttacagcaacgcagttatttagaagtttaattt |
10878165 |
T |
|
| Q |
402 |
aaatataaaccataattagaaggaaacaatggatgaatgttcatgttcgtcttcttcctactaagtctcttggtgaaatcttaagcatttag |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878166 |
aaatataaaccataattagaaggaaacaatggatgaatgttcatgttcgtcttcttcctactaagtctcttggtgaaatcttaagcatttag |
10878257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 10328929 - 10328870
Alignment:
| Q |
8 |
cctccgcctgacatgcaatctctcgtcctaaaggataagcgtggaacttaatttcgtctt |
67 |
Q |
| |
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||||||||||||||| |||||||| |||| | ||||| | ||||||||||||||||||| |
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| T |
10328929 |
cctccgcctgacatggaatctctcatcctgagagataaacttggaacttaatttcgtctt |
10328870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 13278688 - 13278748
Alignment:
| Q |
6 |
gccctccgcctgacatgcaatctctcgtcctaaaggataagcgtggaacttaatttcgtct |
66 |
Q |
| |
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|||||||||||| |||| |||||||| |||| | ||||| | |||||||||||||||||| |
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| T |
13278688 |
gccctccgcctgtcatggaatctctcatcctgagagataaccttggaacttaatttcgtct |
13278748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 12608100 - 12608162
Alignment:
| Q |
4 |
ctgccctccgcctgacatgcaatctctcgtcctaaaggataagcgtggaacttaatttcgtct |
66 |
Q |
| |
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|||||||||| |||||| | |||||||| |||| | ||||||| |||||||||||||||||| |
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| T |
12608100 |
ctgccctccgtctgacacggaatctctcatcctgagagataagcttggaacttaatttcgtct |
12608162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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