View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13797_low_1 (Length: 686)
Name: NF13797_low_1
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 184 - 624
Target Start/End: Original strand, 3104438 - 3104898
Alignment:
| Q |
184 |
ggagtttttgaattgaatcaagaaatggcaccaccagcagcaaacaacgttggaattcttgctcttgacatctacttccctcctaactgcgttcaacagg |
283 |
Q |
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| T |
3104438 |
ggagtttttgaattgaatcaagaaatggcaccagcagcagcaaacaacgttggaattcttgctcttgacatctacttccctcctaactgcgttcaacagg |
3104537 |
T |
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| Q |
284 |
ttacaccgcttcctaattcttttcatcatttcattccaacattcattaacctaatcattcaattaatcattagtgatgttaattgaaattactttaacct |
383 |
Q |
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| T |
3104538 |
taacaccgcttcttaattcttttcatcatttcattccaagattcattaacctaatcattcaattaatgattagtgatgttaattgaaattactttaacct |
3104637 |
T |
|
| Q |
384 |
ctttttt---------------------gattcaggaagcattggaggctcatgatggtgctagtaaagggaaatatacaattggacttggacaagattg |
462 |
Q |
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| T |
3104638 |
ctttttttttaattttgtttttgtttttgatgcaggaagcattggaggctcatgatggtgctagtaaagggaaatatacaattggacttggacaagattg |
3104737 |
T |
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| Q |
463 |
catgtcattttgctctgatgttgaagatgtcatctcaatgaggtttctttctttctttcttgatgatgatgttgaaccatttaaaaccttgtcatggttt |
562 |
Q |
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| T |
3104738 |
catgtcattttgctctgatgttgaagatgtcatctcaatgaggtttctttctttcttt-atgatgatgatgttgaaccatttaaaaccttgtcatggtgt |
3104836 |
T |
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| Q |
563 |
agttttagtgttttattaccatcttttgtcagacaaaactgctgtctgtatgtgtgtttaat |
624 |
Q |
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| T |
3104837 |
agttttagtgttttattaccatcttttgtgagacaaaactgctgtctgtatgtgtgtttaat |
3104898 |
T |
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Back To:
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Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 396 - 506
Target Start/End: Complemental strand, 22745797 - 22745687
Alignment:
| Q |
396 |
aggaagcattggaggctcatgatggtgctagtaaagggaaatatacaattggacttggacaagattgcatgtcattttgctctgatgttgaagatgtcat |
495 |
Q |
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||||||| || || ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||||| | || |
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| T |
22745797 |
aggaagctttagaagctcatgatggtgtgagcaaagggaaatatacaattggacttggacaagattgtatggcattttgtactgaggttgaagatattat |
22745698 |
T |
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| Q |
496 |
ctcaatgaggt |
506 |
Q |
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| T |
22745697 |
ctcaatgaggt |
22745687 |
T |
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