View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13797_low_10 (Length: 373)
Name: NF13797_low_10
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 225493 - 225849
Alignment:
| Q |
1 |
tatcaggatcagaagcaaatatttgttgacttatatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225493 |
tatcaggatcagaagcaaatatttgttgacttatatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataat |
225592 |
T |
|
| Q |
101 |
tataaactataaactacatacaatccgaaccagaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225593 |
tataaactataaactatatacaatccgaactagaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtc |
225692 |
T |
|
| Q |
201 |
caggccaagtttgagaaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgcccactgcttcttcac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
225693 |
caggccaagtttgagaaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcggaaaagagatgcccactgcttcttcac |
225792 |
T |
|
| Q |
301 |
acatgatatttgtgtccaatcactcactcctgctcttatgaatatctctatcatcac |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
225793 |
acatgatatttgtgtccaatcactcacttctgttcttatgaatatctctatcatcac |
225849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 233108 - 233440
Alignment:
| Q |
16 |
caaatatttgttgacttatatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataattataaactataaact |
115 |
Q |
| |
|
|||||| ||||||| ||||||||| || ||||||| ||||||||| |||| ||||||| |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
233108 |
caaataattgttgatttatatgtatggtcatgaatatcctgaaattattaacatacaatatcaatttgtgaaacactaatata--------ctataaact |
233199 |
T |
|
| Q |
116 |
acatacaatccgaaccagaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtccaggccaagtttgag |
215 |
Q |
| |
|
||||| |||| |||| ||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
233200 |
acatagaatcagaactcaaatcctgatagtaacaatctta-atcaagttttacttactttctgactaaacctggaggaataggtctaggccaagtttgag |
233298 |
T |
|
| Q |
216 |
aaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgcccactgcttcttcacacatgatatttgtgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
233299 |
aaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgcccactgcttcttcacacatgatatttgtgt |
233398 |
T |
|
| Q |
316 |
ccaatcactcactcctgctcttatgaatatctctatcatcac |
357 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
233399 |
ccaatcactcacttctgttcttatgaatatctctatcatcac |
233440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University