View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13797_low_13 (Length: 326)

Name: NF13797_low_13
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13797_low_13
NF13797_low_13
[»] scaffold0003 (2 HSPs)
scaffold0003 (22-310)||(41667-41956)
scaffold0003 (29-310)||(35004-35286)
[»] chr6 (3 HSPs)
chr6 (22-310)||(27445402-27445691)
chr6 (22-303)||(20909306-20909586)
chr6 (22-303)||(20923754-20924034)
[»] chr8 (3 HSPs)
chr8 (22-303)||(42312420-42312700)
chr8 (212-248)||(8333302-8333338)
chr8 (212-248)||(15581194-15581230)
[»] chr1 (2 HSPs)
chr1 (22-303)||(41326204-41326484)
chr1 (22-102)||(47246912-47246992)
[»] chr3 (2 HSPs)
chr3 (144-243)||(50717647-50717745)
chr3 (144-243)||(50795103-50795201)
[»] chr7 (1 HSPs)
chr7 (220-301)||(11504776-11504856)
[»] chr5 (1 HSPs)
chr5 (212-248)||(11909949-11909985)


Alignment Details
Target: scaffold0003 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 41667 - 41956
Alignment:
Q  22 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgt 120  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| || | |  ||| |    
T  41667 gatgaatcactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctttat 41766  T
Q  121 cttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagct 220  Q
     ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||    
T  41767 tttctgttggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggct 41866  T
Q  221 aattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaatt 310  Q
    ||||||||||||||| ||||||    ||||||||||||||||| ||||||| || || |||||||||||| |||||||||||||||||||    
T  41867 aattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaatt 41956  T

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Target: scaffold0003; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 29 - 310
Target Start/End: Original strand, 35004 - 35286
Alignment:
Q  29 cactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgtcttctgc 127  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||   |  ||| | |||||     
T  35004 cactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataccatctttattttctgt 35103  T
Q  128 tggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagctaattgct 227  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  35104 tggagcaaaatctgtatggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgct 35203  T
Q  228 gcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaatt 310  Q
    |||||||||||||||    ||||||||||||||||  |||||||||| || |||||||||||| |||||||||||||||||||    
T  35204 gcttcagagtgccctattactttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaattagcagaatt 35286  T

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Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 310
Target Start/End: Complemental strand, 27445691 - 27445402
Alignment:
Q  22 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgt 120  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| || | |  ||| |    
T  27445691 gatgaatcactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctttat 27445592  T
Q  121 cttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagct 220  Q
     ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||    
T  27445591 tttctgttggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggct 27445492  T
Q  221 aattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaatt 310  Q
    ||||||||||||||| ||||||    ||||||||||||||||| ||||||| || || |||||||||||| |||||||||||||||||||    
T  27445491 aattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaatt 27445402  T

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Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 20909306 - 20909586
Alignment:
Q  22 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 121  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||| || |||||| |||||| ||||  |||| |||||| |  ||||||   ||  |     
T  20909306 gatgaatcactcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgattcttcatt 20909405  T
Q  122 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 221  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||   |||  ||||    
T  20909406 ttctgctggaacaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggcta 20909505  T
Q  222 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattag 303  Q
    ||| |||||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||    
T  20909506 attcctgcttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattag 20909586  T

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Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 20923754 - 20924034
Alignment:
Q  22 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 121  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||| || |||||| |||||| ||||  |||| |||||| |  ||||||   ||  |     
T  20923754 gatgaatcactcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgattcttcatt 20923853  T
Q  122 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 221  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||   |||  ||||    
T  20923854 ttctgctggaacaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggcta 20923953  T
Q  222 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattag 303  Q
    ||| |||||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||    
T  20923954 attcctgcttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattag 20924034  T

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Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 42312420 - 42312700
Alignment:
Q  22 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 121  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||  ||||  |||| |||||| || ||||||   ||  |     
T  42312420 gatgaatcactcaagcttggatggatttcatttaaagtcttccaaaaataaaaatactactttagaaagctcattaatagaactaatatgattcttcatt 42312519  T
Q  122 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 221  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||   |||  ||||    
T  42312520 ttctgctagaacaaaatctgattggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtgtaggcta 42312619  T
Q  222 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattag 303  Q
    ||| |||||||| ||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||    
T  42312620 atttctgcttcatagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattag 42312700  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 8333338 - 8333302
Alignment:
Q  212 atgttagctaattgctgcttcagagtgcccttcccct 248  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  8333338 atgttggctaattgctgcttcagagtgccctttccct 8333302  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 15581194 - 15581230
Alignment:
Q  212 atgttagctaattgctgcttcagagtgcccttcccct 248  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  15581194 atgttagctaattgctgcttcagagtaccctttccct 15581230  T

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Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 41326204 - 41326484
Alignment:
Q  22 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 121  Q
    |||| ||||||||||||||||||||| ||||||||| |||| ||||||| |||||| |||||| ||||  | || |||||| || ||||||   ||  |     
T  41326204 gatgaatcactcaagcttggatggatttcatttaaattcttccaaaaataaaaatactacttcagaaagcttattaatagaactaatatgattcttcatt 41326303  T
Q  122 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 221  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||   | |  |  |    
T  41326304 ttctgctggaacaaaatctgattggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtatagggaa 41326403  T
Q  222 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattag 303  Q
    ||| || ||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||    
T  41326404 attcctacttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattag 41326484  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 47246992 - 47246912
Alignment:
Q  22 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaataga 102  Q
    |||| ||||||||||||||||||||| |||||||||| ||| ||||||| |||||| |||||| ||||  |||| ||||||    
T  47246992 gatgaatcactcaagcttggatggatttcatttaaagccttccaaaaataaaaatactacttcagaaagctcattaataga 47246912  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 50717745 - 50717647
Alignment:
Q  144 tggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagctaattgctgcttcagagtgccctt 243  Q
    ||||| ||||||||| ||||| ||||||||||||||  || |||||||||| ||||||||||||||  ||||| || ||||| || ||| | ||||||||    
T  50717745 tggagtgaaaaggaatcaataataagataacactta-caaagaactaaaaaaatatgcaaacaccaatatgttggcgaattgatgattcggtgtgccctt 50717647  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 50795103 - 50795201
Alignment:
Q  144 tggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagctaattgctgcttcagagtgccctt 243  Q
    ||||| ||||||||| ||||| ||||||||||||||  || |||||||||| ||||||||||||||  ||||| || ||||| || ||| | ||||||||    
T  50795103 tggagtgaaaaggaatcaataataagataacactta-caaagaactaaaaaaatatgcaaacaccaatatgttggcgaattgatgattcggtgtgccctt 50795201  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 11504856 - 11504776
Alignment:
Q  220 taattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaatt 301  Q
    |||||||||||| |||||||| || ||||||| ||||| | ||| |||||||||| || |||||||||||  ||||||||||    
T  11504856 taattgctgctttagagtgccatttccctttt-aaatgaaaaactacatgagttagttgataattatctaccaaattcaatt 11504776  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 11909949 - 11909985
Alignment:
Q  212 atgttagctaattgctgcttcagagtgcccttcccct 248  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  11909949 atgttggctaattgctgcttcagagtgccctttccct 11909985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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