View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13797_low_14 (Length: 318)
Name: NF13797_low_14
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 30933852 - 30933567
Alignment:
| Q |
17 |
aagaattttaaagagttcaacactgtcaattaattataattgtaagattattaaaaacgttacaaattttactatatatcgataatattaaaataagttc |
116 |
Q |
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| T |
30933852 |
aagaattttaaagagttcaacactgtcaattaattataattgtaagattattaaaaacgttacaaattttactatatatcgataatattagaataagttc |
30933753 |
T |
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| Q |
117 |
tcannnnnnnnnaaatcctcaggtactacaacaatgcttactatgcaaaagttggaggaatcacgaccatagagatgaactttcttgagttggacttcct |
216 |
Q |
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| T |
30933752 |
tcatttttttttaaatcctcaggtactacaacaatgcttactatgcaaaagttggaggaatcacgaccatagagatgaactttcttgagttggacttcct |
30933653 |
T |
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| Q |
217 |
atttggtttagggttccatttaaatgtaactccaaacactttccaagcttattgtgttcacctacaaagtgaaatgatgatgatac |
302 |
Q |
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| T |
30933652 |
atttggtttagggttccatttaaatgtaactccaaacactttccaagcttattgtgttcacctacaaagtgaaatgatgatgatac |
30933567 |
T |
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Back To:
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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 130 - 292
Target Start/End: Original strand, 1501220 - 1501382
Alignment:
| Q |
130 |
aatcctcaggtactacaacaatgcttactatgcaaaagttggaggaatcacgaccatagagatgaactttcttgagttggacttcctatttggtttaggg |
229 |
Q |
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|||| |||||| |||||| |||||||| ||||||||||||||||||||||| | | |||||||| |||||||||||||| ||| | ||||||||||| |
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| T |
1501220 |
aatcttcaggtgctacaataatgcttattatgcaaaagttggaggaatcaccaaaacggagatgaattttcttgagttggatttcttgtttggtttaggt |
1501319 |
T |
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| Q |
230 |
ttccatttaaatgtaactccaaacactttccaagcttattgtgttcacctacaaagtgaaatg |
292 |
Q |
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| T |
1501320 |
ttcaatttaaatgtaacaccagtcacatttcaagcctattgtgttcatctccaaagagaaatg |
1501382 |
T |
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