View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13797_low_15 (Length: 318)
Name: NF13797_low_15
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 5588472 - 5588178
Alignment:
| Q |
17 |
acaaaaaatctctattattttattttattttgtaatttcttnnnnnnnnnnnn-tctatattataaaatcaccatattgatatccttcaaattaaatacg |
115 |
Q |
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| T |
5588472 |
acaacaaatctctattattttattttattttgtaatttcttaaaaaaaaaaaaatctatattattaaatcaccatattgatatccttcaaattaaatacg |
5588373 |
T |
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| Q |
116 |
caggataagagtttggaatcacataattacttcttgatatttggaggtggcactagactttgtcctggaaaagagttgggaatcactgaaatttcaactt |
215 |
Q |
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| T |
5588372 |
caggataagagtttggaatcacataattacttcttgatatttggaggtggcactagactttgtcctggaaaagagttgggaatcactgaaatttcaactt |
5588273 |
T |
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| Q |
216 |
tcttgcaccaccttgtaactagatataggtaagtggtgaataatttagtactcaaaatctacattttaatgtgttaaaaatataaaaagaataat |
310 |
Q |
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| T |
5588272 |
tcttgcaccaccttgtaactagatataggtaagtggtgaataatttagtactcaaaatctacattttaatgtgttaaaaatataaaaagaataat |
5588178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 72 - 310
Target Start/End: Complemental strand, 973605 - 973367
Alignment:
| Q |
72 |
tatattataaaatcaccatattgatatccttcaaattaaatacgcaggataagagtttggaatcacataattacttcttgatatttggaggtggcactag |
171 |
Q |
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| T |
973605 |
tatatcattaaatcagcatattgatatccttcaaattaaattttcaggataagagtttggaatcacaaaattacatcttgatatttggaagtggcactag |
973506 |
T |
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| Q |
172 |
actttgtcctggaaaagagttgggaatcactgaaatttcaactttcttgcaccaccttgtaactagatataggtaagtggtgaataatttagtactcaaa |
271 |
Q |
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| T |
973505 |
actttgtccaggaaaagagttgggaatcactgaaatttcaactttcttgcaccaccttgtaactagatataggtgagttgtgaataatttactattcaaa |
973406 |
T |
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| Q |
272 |
atctacattttaatgtgttaaaaatataaaaagaataat |
310 |
Q |
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| T |
973405 |
atctacatcttaatgtgttgaaaattttaaaagaataat |
973367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 5062914 - 5062815
Alignment:
| Q |
146 |
ttcttgatatttggaggtggcactagactttgtcctggaaaagagttgggaatcactgaaatttcaactttcttgcaccaccttgtaactagatataggt |
245 |
Q |
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| T |
5062914 |
ttcttgatatttggaggaggcactagacaatgtccaggaaaggagttgggaatagcagaaatttccactttcttgcactactttgtaactagatacaggt |
5062815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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