View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13797_low_2 (Length: 626)
Name: NF13797_low_2
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Complemental strand, 31709473 - 31708946
Alignment:
| Q |
13 |
aatataccatacataggagttaacaagacagcaaagttcaaatgaattcacacaccattctctgaaagaaaagaaaatgtctgcacaaaagtaaagcatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31709473 |
aatataccatacataggagttaacaagacagcaaagttcaaatgaattcacacaccattctctgaaagaaaagaaaatgtccgcacaaaagtaaagcatc |
31709374 |
T |
|
| Q |
113 |
cccaaatcttgtgctttacatgtgttagtttgcattagtacaaagcttttattcacttcataattcattctcaggaatcataaacaaaaatcagttacaa |
212 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31709373 |
cccaaatcttgtgctttacatgtggtagtttgcattagtacaaagcttttattcacttcataattcattctcaggaatcatgaacaaaaatcagttacaa |
31709274 |
T |
|
| Q |
213 |
aacttg----gaacaaggataattttagtaacagtgatttaacattcggtcccaacactaaggctttaaatctcaaactnnnnnnnttaaatcaaatgac |
308 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
31709273 |
atcttggactgaacaaggataattttagtaacagtgatttaacattcggtcccaacactaaggctttaaatcttgaactaaaaaaaataaatcaaatgac |
31709174 |
T |
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| Q |
309 |
acaaaacatgttagttaccaaatgccctaaaacaaatgtacattaccaaatttgaacccaaagcttctttcttcaaattatcacattcctgcaaagcata |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31709173 |
acaaaacatgttagttaccaaatgccctaaaacaaatgtacattaccaaatttgaacccaaagcttctttcttcaaattctcacattcctgcaaagcata |
31709074 |
T |
|
| Q |
409 |
agcagcaatccctgacgcattctaaa-ccaatatggtttatttagaatacaagttgtctgatcttcattaaacggtccagaacccttgactgtgtgattg |
507 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
31709073 |
agcagcaatccctgatgcattctaaatccaatatggtttatttagaatacaagttgtctgatcttcattaaacggtccagaccccttgactgagtgattg |
31708974 |
T |
|
| Q |
508 |
tgcgttttctctctgaccgtagagaacc |
535 |
Q |
| |
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|| ||||| |||||||||||||||||| |
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| T |
31708973 |
tgtgttttgactctgaccgtagagaacc |
31708946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 43401878 - 43401833
Alignment:
| Q |
543 |
gaaacagccaatattattaaatcaagccggcgtaagatgcaccaag |
588 |
Q |
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| T |
43401878 |
gaaacagccaatattattaaatccagccggcgtaagacacaccaag |
43401833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 67880 - 67814
Alignment:
| Q |
356 |
aaatttgaacccaaagcttctttcttcaaattatcacattcctgcaaagcataagcagcaatccctg |
422 |
Q |
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| T |
67880 |
aaatttgaacccaaaccttctttcttcaaattttcacattcctgcaaagcatcagcagcattccctg |
67814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 68060 - 67990
Alignment:
| Q |
144 |
gcattagtacaaagcttttattcacttcataattcattctcaggaatcataaacaaaaatcagttacaaaa |
214 |
Q |
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|||||| |||| |||||||||| || ||||||||||||||||||||| || | ||||||||||||| |||| |
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| T |
68060 |
gcattaatacacagcttttatttacatcataattcattctcaggaattatgagcaaaaatcagttagaaaa |
67990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 584
Target Start/End: Complemental strand, 32546742 - 32546705
Alignment:
| Q |
547 |
cagccaatattattaaatcaagccggcgtaagatgcac |
584 |
Q |
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|||||||||||||||| |||||||||||||||| |||| |
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| T |
32546742 |
cagccaatattattaactcaagccggcgtaagacgcac |
32546705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 543 - 609
Target Start/End: Original strand, 41858317 - 41858383
Alignment:
| Q |
543 |
gaaacagccaatattattaaatcaagccggcgtaagatgcaccaagcaagaaaaggggaataattac |
609 |
Q |
| |
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||||||||||||||||||||| || ||||||||||| | |||||||||||| ||||| || |||||| |
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| T |
41858317 |
gaaacagccaatattattaaagcacgccggcgtaagctacaccaagcaagacaagggaaaaaattac |
41858383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 594
Target Start/End: Complemental strand, 7955465 - 7955414
Alignment:
| Q |
543 |
gaaacagccaatattattaaatcaagccggcgtaagatgcaccaagcaagaa |
594 |
Q |
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|||||| | |||||||||||||||||||||| |||| | ||||||||||||| |
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| T |
7955465 |
gaaacaacgaatattattaaatcaagccggcataagctacaccaagcaagaa |
7955414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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