View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13797_low_21 (Length: 213)
Name: NF13797_low_21
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 43759800 - 43759971
Alignment:
| Q |
16 |
attattctttatatagaaaatattttaaataaattatttcctttttgtcttgaatttaatttaatgtcatgatacacacatgatgaatgttaatcttgtg |
115 |
Q |
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| T |
43759800 |
attattctttatatagaaaatattttaaataaattatttcctttttgtcttgaatttaatttaatgtcatgatacacacatgatgaatgttaatcttgtg |
43759899 |
T |
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| Q |
116 |
ccactgattatgattaaaaattaatgacaccgaaattgtctcttttgtttctctttctatgtctatgtgaataatg |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43759900 |
ccactgattatgattaaaaattaatgacaccgaaattgtctct----tttctctttctatgtctatgtgaataatg |
43759971 |
T |
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