View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13797_low_3 (Length: 613)
Name: NF13797_low_3
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 179 - 596
Target Start/End: Original strand, 46999656 - 47000073
Alignment:
| Q |
179 |
gtccataatatttcaggagaagaaaatgagttggacagttggagatgctgtggactataaaggcttcccagctgataggtccaaaactggtggttgggtt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46999656 |
gtccataatatttcaggagaagaaaatgagttggacagttggagatgctgtggactataaaggcttcccagctgataggtccaaaactggtggttgggtt |
46999755 |
T |
|
| Q |
279 |
ccagctgctcttattttaggtttgttacacttctagcataaccactcaaactctttatacctcatgagggggtgtagaattagaaacacagtgtgtattt |
378 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46999756 |
ccagctgctctcattttaggtttgttacacttctagcataaccactcaaactctttatacctcatgagggggtgtagaattagaaacacagtgtgtattt |
46999855 |
T |
|
| Q |
379 |
ggtgatggtgttacatatatgatccatttttggagaacttttccttctctaaaaatcctccttcattgcaacagtagcctgagacatagacatagacaag |
478 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46999856 |
ggtgatggttttacatatatgatccatttttggagaacttttccttctctaaaaatcctccttcattgcaacagtagcctgatacatagacatagacaag |
46999955 |
T |
|
| Q |
479 |
gcttgactttaatacacatgattatcatgaactttcctaaaaagtttgaggaggtagttggatctcataaatgattttaattgctactgactaactgtaa |
578 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46999956 |
gcttgactttaatacgcatgattatcatgaactttcctaaaaagtttgaggaggtagttggatctcataaatgattttaattgctactgaccaactgtaa |
47000055 |
T |
|
| Q |
579 |
caaggttttagtacatgt |
596 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
47000056 |
caaggttttagtacatgt |
47000073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 46999490 - 46999624
Alignment:
| Q |
10 |
agtgagatgaagtgtatatacaacaatctcaagagtataccttctttctacattaacacctagagttcttttctttgtgaaacttcataacatggttagt |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46999490 |
agtgagttgaagtgtatatacaacaatctcaagagtataccttctttctacattaacacctagagttcttttctttgtgaaacttcataacatggttagt |
46999589 |
T |
|
| Q |
110 |
ttttagtcaatggaagctttaacaaacttaagaga |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
46999590 |
ttttagtcaatggaagctttaacaaacttaagaga |
46999624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 261 - 594
Target Start/End: Original strand, 7935014 - 7935338
Alignment:
| Q |
261 |
aaaactggtggttgggttccagctgctcttattttaggtttgttacacttctagcataaccactcaaactctttatacctcatgagggggtgtagaatta |
360 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| | ||| |
|
|
| T |
7935014 |
aaaactggtgattgggttccagctgctctcattttaggtttgttacacttctagcataaccactcaaactctttataattcatgaggtgatgtaaagtta |
7935113 |
T |
|
| Q |
361 |
gaaacacagtgtgtatttggtgatggtgttacatatatgatccatttttggagaacttttccttctctaaaaatcctccttcattgcaacagtagcctga |
460 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7935114 |
gaaatacatagtgtatttggtgatggtgttacatatatgatccatttttggagcactttaccttctctaaaaatcctctttcattgcaacagtagcctg- |
7935212 |
T |
|
| Q |
461 |
gacatagacatagacaaggcttgactttaatacacatgattatcatgaactttcctaaaaagtttgaggaggtagttggatctcataaatgattttaatt |
560 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
7935213 |
-----agacatagacaaagcttaactttaatacacatgattatcatgaactttcctaaaaagtttgaggaggtaattggatctcataaatggttttaatt |
7935307 |
T |
|
| Q |
561 |
gctactgactaactgtaacaaggttttagtacat |
594 |
Q |
| |
|
|||| ||||||| || |||||||||||||||| |
|
|
| T |
7935308 |
gcta---actaactatagcaaggttttagtacat |
7935338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University