View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13797_low_4 (Length: 611)
Name: NF13797_low_4
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 47322112 - 47321678
Alignment:
| Q |
9 |
cacagagaggttcttctcatcacaacgacaccgctcaattctacgatcaaatcaaatccaagcttcagctcgatttcaacaagaaccagctcgttgagaa |
108 |
Q |
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| T |
47322112 |
cacagagaggttcttctcatcacaacgacaccgctcaattctacgatcaaatcaaatccaagcttcagctcgatttcaacaagaaccagctcgttgagaa |
47322013 |
T |
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| Q |
109 |
gatccgaaggttgaagaagaaatacagaaacgttgtaagcaaaatgagctccggtaaggaattcgtcttcaaaactgctcacgatcaagccacgtttgaa |
208 |
Q |
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| T |
47322012 |
gatccgaaggttgaagaagaaatacagaaacgttgtaagcaaaatgagctccggtaaggaattcgtcttcaaaactgctcacgatcaagccacgtttgaa |
47321913 |
T |
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| Q |
209 |
atctctcgcaagatctggaacaacgtggcgccaatcgccggtgatattgctatagacgacgatgaaatcaatctcaatccaattcctaaccctaacctca |
308 |
Q |
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| T |
47321912 |
atctctcgcaagatctggaacaacgtggcgccaatcgccggtgatattgctatagacgacgatgaaatcaatctcaatccaatttctaaccctaacctca |
47321813 |
T |
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| Q |
309 |
atttcactcccgtaattctcaaaagtgaggtaaattcaaccacgcggaagcgttcacggcctcgatccgtttctatcagaagctttgagaagcgtgaatc |
408 |
Q |
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| T |
47321812 |
atttcactcccgtaattctcaaaagtgaggtaaattcaaccacgcggaagcgttcacggcctcgatccgtttctatcagaagctttgagaagcgtgaatc |
47321713 |
T |
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| Q |
409 |
aaatgatgcagtagcatcaaacagagatcgtgatt |
443 |
Q |
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| T |
47321712 |
aaatgatgcagtagcatcaaacagagatcgtgatt |
47321678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 527 - 595
Target Start/End: Complemental strand, 47321600 - 47321532
Alignment:
| Q |
527 |
gcttatgctacaactgctacagttaatcctgcaataacacctacaattactactcctaatgttaatact |
595 |
Q |
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| T |
47321600 |
gcttatactacaactgctacagttaatcctgcaataacacctacaattactactcctaatgttaatact |
47321532 |
T |
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