View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13797_low_5 (Length: 554)
Name: NF13797_low_5
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 15 - 550
Target Start/End: Original strand, 40616840 - 40617375
Alignment:
| Q |
15 |
caaaggaccaacaaaatgacgaaataacacacacaagcttaattttaccttatgcaaattaagcttagtcttattaattatatatattagccactacttg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40616840 |
caaaggaccaacaaaatgacgaaataacacacacaagcttaattttaccttatgcaaattaagcttagtcttattaattatatatattagccactacttg |
40616939 |
T |
|
| Q |
115 |
agtattctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40616940 |
agtattctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattg |
40617039 |
T |
|
| Q |
215 |
ttacgacaaggtggctgacctgcatgttcatcatcacatccattcactgaaccacattggtctacccctttcgctgtcacagtcctcccgttcgacgccc |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
40617040 |
ttacgacaaggtggctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcacagtcctcccgttcgacgccc |
40617139 |
T |
|
| Q |
315 |
taattctaataaattttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttctgagttgctatggaatatctcatcgcactg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40617140 |
taattctaataaattttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttccgagttgctatggaatatctcatcgcactg |
40617239 |
T |
|
| Q |
415 |
agaagcacctcctccgtctcctcctgttaaatatagtttgagatttattaaaattaattagttgaatattatttaaggtagttacaagtttgctnnnnnn |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40617240 |
agaagcacctcctccgtctcctcctgttaaatatagtttgagatttattaaaattaattatttgaatattatttaaggtagttacaagtttgctaaaaaa |
40617339 |
T |
|
| Q |
515 |
nnnngaggtagttacaagttagttataatcacttga |
550 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
40617340 |
aaaagaggtagttacaagttagttataatcacttga |
40617375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 109 - 435
Target Start/End: Original strand, 40627646 - 40627971
Alignment:
| Q |
109 |
tacttgagtattctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccaca |
208 |
Q |
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|||||||||| | ||| ||||||||| |||||||||||||||||||||||||| | |||||| || |||| ||| |||||||| | |||||||||||||| |
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| T |
40627646 |
tacttgagtaattttt-aagccatagaccatgtaactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccaca |
40627744 |
T |
|
| Q |
209 |
atattgttacgacaaggtggctgacctgcatgttcatcatcacatccattcactgaaccacattggtctacccctttcgctgtcacagtcctcccgttcg |
308 |
Q |
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||||||||| ||||||||||||||||||| ||||| | ||||||||||||||| ||| |||| ||||| ||| ||||||| |||||| ||||||||||| |
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| T |
40627745 |
atattgttatgacaaggtggctgacctgcgtgttccttatcacatccattcaccgaatcacactggtccaccactttcgccgtcacactcctcccgttcc |
40627844 |
T |
|
| Q |
309 |
acgccctaattctaataaattttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttctgagttgctatggaatatctcatc |
408 |
Q |
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|||| | |||||||| | ||||||||| ||||||||||| ||||||| ||||| || || ||||| | |||||| |||||| ||| || | ||||| |
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| T |
40627845 |
tcgccgtgattctaatcatttttccacatcttgaacctccgttgtaccacccagtggacaaagccaccactctttccgagttgtcgtggtatttttcatc |
40627944 |
T |
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| Q |
409 |
gcactgagaagcacctcctccgtctcc |
435 |
Q |
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||| ||||| | ||||||||||||||| |
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| T |
40627945 |
gcattgagacggacctcctccgtctcc |
40627971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 123 - 303
Target Start/End: Original strand, 40610453 - 40610633
Alignment:
| Q |
123 |
ttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacgaca |
222 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||||||| |||| | || |||| ||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
40610453 |
ttcaagctatagaccatgtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatattgttacgaca |
40610552 |
T |
|
| Q |
223 |
aggtggctgacctgcatgttcatcatcacatccattcactgaaccacattggtctacccctttcgctgtcacagtcctccc |
303 |
Q |
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||||||||| | |||||| || |||||||| |||||||||||| |||||| || ||| | ||||| |||||| ||||||| |
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| T |
40610553 |
aggtggctgccatgcatgctcctcatcacaaccattcactgaatcacattcatccaccaccttcgccgtcacactcctccc |
40610633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 40610364 - 40610406
Alignment:
| Q |
48 |
caagcttaattttaccttatgcaaattaagcttagtcttatta |
90 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| |
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| T |
40610364 |
caagcttaatttaaccttatgcaaattaagcttgttcttatta |
40610406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 40641337 - 40641268
Alignment:
| Q |
330 |
ttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttctgagttgctatggaa |
399 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| || | ||||| | ||||||||||| ||||||||| |
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| T |
40641337 |
ttccacaccttgaacctccgttgtaccacccagtggacagcgccactactctttctgagtagctatggaa |
40641268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 501
Target Start/End: Original strand, 44565151 - 44565182
Alignment:
| Q |
470 |
aattagttgaatattatttaaggtagttacaa |
501 |
Q |
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| T |
44565151 |
aattagttgaatattatttaaggtagttacaa |
44565182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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