View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13797_low_6 (Length: 537)

Name: NF13797_low_6
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13797_low_6
NF13797_low_6
[»] chr5 (21 HSPs)
chr5 (17-537)||(8643347-8643868)
chr5 (188-537)||(8635921-8636280)
chr5 (25-166)||(8677481-8677623)
chr5 (30-379)||(8527857-8528207)
chr5 (26-133)||(8636291-8636398)
chr5 (255-378)||(8640449-8640573)
chr5 (188-327)||(8677342-8677482)
chr5 (306-398)||(9002262-9002354)
chr5 (289-388)||(9075307-9075406)
chr5 (308-401)||(8420392-8420485)
chr5 (30-174)||(8534627-8534772)
chr5 (32-112)||(8640670-8640750)
chr5 (255-372)||(8534438-8534558)
chr5 (35-113)||(8548782-8548860)
chr5 (306-382)||(8549071-8549148)
chr5 (28-68)||(1601056-1601096)
chr5 (494-537)||(8545351-8545394)
chr5 (468-537)||(8640251-8640317)
chr5 (54-99)||(9075344-9075389)
chr5 (505-537)||(8549193-8549225)
chr5 (353-385)||(27458082-27458114)
[»] chr4 (1 HSPs)
chr4 (38-379)||(9442024-9442360)
[»] chr7 (5 HSPs)
chr7 (306-481)||(48362758-48362933)
chr7 (306-483)||(35777264-35777444)
chr7 (32-173)||(35777467-35777608)
chr7 (28-94)||(48362518-48362584)
chr7 (54-94)||(48362777-48362817)
[»] chr1 (3 HSPs)
chr1 (255-346)||(5129819-5129911)
chr1 (320-373)||(26324948-26325001)
chr1 (143-181)||(26324397-26324435)
[»] chr8 (2 HSPs)
chr8 (482-537)||(44438654-44438709)
chr8 (326-392)||(44438492-44438558)


Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Complemental strand, 8643868 - 8643347
Alignment:
Q  17 agtttttcaagattattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagt 116  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  8643868 agtttttcaagattattccttaatattgttttaattgatataggtgtgcaaatgtcaaattggaagaagaaaatgaagttctttccttgtcacaacaagt 8643769  T
Q  117 tctttgagatttggaattacacgttcttcatcatcttatggtgacttgattaatatattttcctcagtctaatggggaagaattcgatgatgagcctgta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||    
T  8643768 tctttgagatttggaattacacgttcttcatcatcttatggtgacttgattaatatattttcctcagcctgatggtgaagaattcgatgatgagcctgta 8643669  T
Q  217 tattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggcacttacttaggctcttttttgtaatattgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643668 tattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggcacttacttaggctcttttttgtaatattgg 8643569  T
Q  317 tgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcctccttctgtgagaggcttt 416  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643568 tgttattttatataggtgtgcaaattttaaattatatgaaaaaaatgaagatcttgaatgatgacttgacaagtaccctcctccttctgtgagaggcttt 8643469  T
Q  417 tgacg-aagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaattatcatatttagaaaagaaatgcatatctcatt 515  Q
    ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8643468 tgatgaaagagtacaactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaattatcatatttagaaaaaaaatgcatatctcatt 8643369  T
Q  516 ttaggatgcaaatgatgtcttt 537  Q
    ||||||||||||||||||||||    
T  8643368 ttaggatgcaaatgatgtcttt 8643347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 188 - 537
Target Start/End: Complemental strand, 8636280 - 8635921
Alignment:
Q  188 atggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggca 287  Q
    |||| ||||||||||  ||||||||  ||| ||| || |||| |||||||||||||||||||| ||||| | | |||||||| || |||||||||||| |    
T  8636280 atggtgaagaattcggcgatgagcccatatcttaagagaagtgcgtctcttttcacattgatggggatactgtaacccttgcttaatacaattttaggta 8636181  T
Q  288 c-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgac 386  Q
    | ||||| ||||||| ||  |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| || ||| |    
T  8636180 cattactaaggctctgttacgtaatattggcgttattttatataggtatgcaaattttaaattaagtgaagaaaatgaagatcttgaatgacgatttggc 8636081  T
Q  387 aagtaccctcctccttctgtga-gaggcttttga-----cgaagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcaca 480  Q
    |||| | ||||||||||   ||  ||||||||||      |||||||| ||||||||| ||||| ||||||||||  ||||||| |||||||||||||||    
T  8636080 aagtgctctcctccttcgaggacaaggcttttgatgaagagaagagtacaactaaaaacaaggaattttcatacagcaggaaggtttatgctaaatcaca 8635981  T
Q  481 attatcatattt---agaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 537  Q
    ||||| ||||||   |||||| ||||||||||||||||||||||||||||||||||||||    
T  8635980 attatgatatttgaaagaaaaaaaatgcatatctcattttaggatgcaaatgatgtcttt 8635921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 8677623 - 8677481
Alignment:
Q  25 aagattattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaac-aagttctttga 123  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||| |||| || ||  ||||    
T  8677623 aagattattcgctaatattgttttaattgatataggtgtgcaaatgttgaattgcgggaagaaaatgaagttctttccttgtcacaacaaatttgattga 8677524  T
Q  124 gatttggaattacacgttcttcatcatcttatggtgacttgat 166  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  8677523 gatttggaattacacattcttcatcatcttatggtgacttgat 8677481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 30 - 379
Target Start/End: Complemental strand, 8528207 - 8527857
Alignment:
Q  30 tattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttg 129  Q
    ||||||| |||||||||||||||  ||||||||||||||  | |||||||  | |||||| || ||||||||  ||||||||||  || ||||||| |||    
T  8528207 tattccccaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttg 8528108  T
Q  130 gaattacacgttcttcatcatcttatggtgacttgattaatatattttcctcagt--ctaatggggaagaattcgatgatgagcctgtatattatgaaaa 227  Q
     || | || | | ||||||||||||| |||||||||| ||||||| ||||||  |  || |||| ||||| || |  || |||||||  |  || ||| |    
T  8528107 aaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggcgaagagcctgcttcctaagaaga 8528008  T
Q  228 gtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttatttta 326  Q
    ||||||||  ||||  ||||||  |  ||||||||||| ||| || |||||||||||| |  |||||||| || | || |||||||||||||||||||||    
T  8528007 gtacgtctgctttcgtattgattgg--tattctgacccctgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttatttta 8527910  T
Q  327 tataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatg 379  Q
    ||||||||||||||| |||||||  |||||||| |||||||||||||||||||    
T  8527909 tataggtgtgcaaatattaaattgcatgaagaagatgaagatcttgaatgatg 8527857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 8636398 - 8636291
Alignment:
Q  26 agattattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgaga 125  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||||||||||  | |||||||    
T  8636398 agattattccctcatattgttttgattgatataggtgtgcaaatgttgaattgccggaagaaaatgaagttctttccttgtctcaacaaactgtttgaga 8636299  T
Q  126 tttggaat 133  Q
    ||||||||    
T  8636298 tttggaat 8636291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 378
Target Start/End: Complemental strand, 8640573 - 8640449
Alignment:
Q  255 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatat 353  Q
    |||| |||||| ||| |||||||||||||||||| |||||||| || | ||| |||  ||||||||||||||||||||||||||||| ||||||||   |    
T  8640573 tattttgacccctgcttactacaattttaggcacgttacttagactttgtttcgtaccattggtgttattttatataggtgtgcaaaatttaaattgcgt 8640474  T
Q  354 gaagaaaatgaagatcttgaatgat 378  Q
    |||||||||||||||||||||||||    
T  8640473 gaagaaaatgaagatcttgaatgat 8640449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 188 - 327
Target Start/End: Complemental strand, 8677482 - 8677342
Alignment:
Q  188 atggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggca 287  Q
    |||| |||||||| | ||| |||||  ||||| | ||||||||||||||||||||| |||||| | ||||||||| || | | ||||||||||||||| |    
T  8677482 atggtgaagaatttggtgacgagcccatatatgaagaaaagtacgtctcttttcactttgatgggaatattctgatccgtccttactacaattttaggaa 8677383  T
Q  288 -cttacttaggctcttttttgtaatattggtgttattttat 327  Q
      |||||| |||||| |||||||||||||||||||||||||    
T  8677382 tgttacttgggctctgttttgtaatattggtgttattttat 8677342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 398
Target Start/End: Complemental strand, 9002354 - 9002262
Alignment:
Q  306 tgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcct 398  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||   ||||||||||||||||||||||||| |||||||| | |||||||||    
T  9002354 tgtaatattggtgttgttttgtataggtgtgcaaagtttaaattgcgtgaagaaaatgaagatcttgaatgacgacttgactattaccctcct 9002262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 289 - 388
Target Start/End: Original strand, 9075307 - 9075406
Alignment:
Q  289 ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaa 388  Q
    |||||||| || | || ||||||| || |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||| ||||    
T  9075307 ttacttagactttgttgtgtaatactgttgttattttatataggtgtgcaaattttaaattgcatgaagagaatgaagatcttgaatgatgtcttaacaa 9075406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 8420485 - 8420392
Alignment:
Q  308 taatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcctcct 401  Q
    ||||| |||||||||||||||||||| |||||| ||  |||  |  ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  8420485 taatactggtgttattttatataggtttgcaaagttagaatcgtgcgaagaaaataaagatcttgaatgatgacttgacaagtatcctcctcct 8420392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 8534772 - 8534627
Alignment:
Q  30 tattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttg---tctcaacaagttctttgagat 126  Q
    ||||||| ||||||||||||||| |||||||||||||||  | |||||||  |||||||| ||||||||||| |||   ||||||| | || |||||||     
T  8534772 tattccccaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaaaggaagttctttctttgcgatctcaacga-ttgtttgagac 8534674  T
Q  127 ttggaattacacgttcttcatcatcttatggtgacttgattaatatat 174  Q
    || ||| | || ||| |||||||||||||||||||||||| |||||||    
T  8534673 tt-gaagttcatgtttttcatcatcttatggtgacttgataaatatat 8534627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 8640750 - 8640670
Alignment:
Q  32 ttccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaac 112  Q
    ||||||||||||||||||||| |||||||||||||||  | ||||||   ||||||||||||||| |||||||||||||||    
T  8640750 ttccctaatattgttttaatttatataggtgtgcaaagtttaaattgggagaagaaaatgaagttttttccttgtctcaac 8640670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 372
Target Start/End: Complemental strand, 8534558 - 8534438
Alignment:
Q  255 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaa--ttttaaattat 351  Q
    ||||||||||||||| || |||||||||||| |  |||||||| ||   |  |||||||||||||||||||||||||||||| ||||  |||||| ||      
T  8534558 tattctgacccttgcttattacaattttaggtatgttacttagacttcgtcatgtaatattggtgttattttatataggtgttcaaattttttaatttgc 8534459  T
Q  352 atgaagaaaatgaagatcttg 372  Q
    |||||||||||||||||||||    
T  8534458 atgaagaaaatgaagatcttg 8534438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 8548782 - 8548860
Alignment:
Q  35 cctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaaca 113  Q
    |||||||||||||||||| ||||||||||| |||  | ||||| || |||||||| |||||| |||| |||||||||||    
T  8548782 cctaatattgttttaatttatataggtgtgtaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaaca 8548860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 8549071 - 8549148
Alignment:
Q  306 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaagaaaatgaagatcttgaatgatgact 382  Q
    |||||||||||||||||||| |||||| ||||||| ||| |||||  || |||||||  |||||||||||||||||||    
T  8549071 tgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 8549148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 1601056 - 1601096
Alignment:
Q  28 attattccctaatattgttttaattgatataggtgtgcaaa 68  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  1601056 attattcccaaatattgttttaatttatataggtgtgcaaa 1601096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 537
Target Start/End: Original strand, 8545351 - 8545394
Alignment:
Q  494 gaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 537  Q
    ||||| |||| || ||||||||||||||||||||||||||||||    
T  8545351 gaaaaaaaatacaaatctcattttaggatgcaaatgatgtcttt 8545394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 537
Target Start/End: Complemental strand, 8640317 - 8640251
Alignment:
Q  468 atgctaaatcacaattatcatatttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 537  Q
    ||||||||||| |||||| ||||||  ||||   ||||||||||||||||||||||||||  ||||||||    
T  8640317 atgctaaatcagaattatgatatttcaaaaa---atgcatatctcattttaggatgcaaacaatgtcttt 8640251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 9075344 - 9075389
Alignment:
Q  54 atataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctt 99  Q
    |||||||||||||||| | |||||||||||||| ||||||| ||||    
T  9075344 atataggtgtgcaaattttaaattgcatgaagagaatgaagatctt 9075389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 505 - 537
Target Start/End: Original strand, 8549193 - 8549225
Alignment:
Q  505 catatctcattttaggatgcaaatgatgtcttt 537  Q
    |||||||| ||||||||||||||||||||||||    
T  8549193 catatctctttttaggatgcaaatgatgtcttt 8549225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 27458082 - 27458114
Alignment:
Q  353 tgaagaaaatgaagatcttgaatgatgacttga 385  Q
    ||||||||||||||||||||||||| |||||||    
T  27458082 tgaagaaaatgaagatcttgaatgacgacttga 27458114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 38 - 379
Target Start/End: Complemental strand, 9442360 - 9442024
Alignment:
Q  38 aatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttggaattaca 137  Q
    |||||||||||||||  ||||||||||||||  | |||||||  | |||||| || ||||||||  ||||||||       ||||||||||| || | ||    
T  9442360 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaag------tttgagatttgaaagttca 9442267  T
Q  138 cgttcttcatcatcttatggtgacttgattaatatattttcctcagt--ctaatggggaagaattcgatgatgagcctgtatattatgaaaagtacgtct 235  Q
     | | ||||||||||||| |||||||||| ||||||| ||||||  |  || |||| ||||| || | ||| |||||||  |  || ||| |||||||||    
T  9442266 tgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtct 9442167  T
Q  236 cttttcacattgatgaggatattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtg 334  Q
      ||||  ||||||  |  ||||||||||||||| || |||||||||||| |  |||||||| || | || |||||||||||||||||||||||||||||    
T  9442166 gctttcgtattgattgg--tattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtg 9442069  T
Q  335 tgcaaattttaaattatatgaagaaaatgaagatcttgaatgatg 379  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||    
T  9442068 tgcaaatattaaattacatgaagaaaatgaagatcttgaatgatg 9442024  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 481
Target Start/End: Original strand, 48362758 - 48362933
Alignment:
Q  306 tgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcctccttctg 405  Q
    ||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||  ||||||| |||| || |||| | |    
T  48362758 tgtaatattcgtgttattt-atataggtgtgcaaatattaaattacatgaagaaaatgaagatctcgaatgatggtttgacaaataccttcttcctccgg 48362856  T
Q  406 t-gagaggcttttgacgaagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaa 481  Q
    | | ||||| ||||  |||||||| |||| | |||| ||| ||| ||||||   || ||||||||| ||||||||||    
T  48362857 tggtgaggcctttggtgaagagtacaactgataagagggaatttccatacactgggcagggttatgttaaatcacaa 48362933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 306 - 483
Target Start/End: Complemental strand, 35777444 - 35777264
Alignment:
Q  306 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctc-ctccttc 403  Q
    |||||||||||||||||||| |||||  ||||||| ||||||| |  |  ||| ||||||||||||||||||||||||||||||||| |||| |||||||    
T  35777444 tgtaatattggtgttattttgtatagtcgtgcaaagttttaaactgcagtaagtaaatgaagatcttgaatgatgacttgacaagtatcctctctccttc 35777345  T
Q  404 tgt-gagaggcttttgacgaagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaatt 483  Q
     || | || ||||||| ||||||||| |||||  | |||| | ||| ||||||  ||| | || |||||||||||||||||    
T  35777344 ggtggtgacgcttttggcgaagagtacaactattatgaagtaatttccatacagtaggcatggctatgctaaatcacaatt 35777264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 35777608 - 35777467
Alignment:
Q  32 ttccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttgg- 130  Q
    ||||||||||||||| | ||  |||||||||||||||    ||||||   ||||||| ||||||||||| |||| ||||| || || ||||||| ||||     
T  35777608 ttccctaatattgttgtcatgtatataggtgtgcaaagtataaattgtgggaagaaagtgaagttcttttcttggctcaagaatttgtttgagacttggt 35777509  T
Q  131 aattacacgttcttcatcatcttatggtgacttgattaatata 173  Q
    || || ||||||||||||||||||| |||||||||| ||||||    
T  35777508 aagtatacgttcttcatcatcttat-gtgacttgataaatata 35777467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 48362518 - 48362584
Alignment:
Q  28 attattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaag 94  Q
    ||||||||  ||||||| ||||||| |||||||||||||||  | |||||||| |||||||| ||||    
T  48362518 attattcctgaatattggtttaatttatataggtgtgcaaagtttaaattgcaggaagaaaaggaag 48362584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 48362777 - 48362817
Alignment:
Q  54 atataggtgtgcaaatgtcaaattgcatgaagaaaatgaag 94  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  48362777 atataggtgtgcaaatattaaattacatgaagaaaatgaag 48362817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 5129911 - 5129819
Alignment:
Q  255 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaa 346  Q
    ||||||||| | ||| || ||||||||||||||| ||| ||||||  | ||  ||||||||||| ||||||||||||||||||||||||||||    
T  5129911 tattctgactcctgcttagtacaattttaggcacattatttaggccttgttacgtaatattggtcttattttatataggtgtgcaaattttaa 5129819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 26324948 - 26325001
Alignment:
Q  320 tattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttga 373  Q
    ||||||||||||||||||||| || || ||  ||||||||||||||||||||||    
T  26324948 tattttatataggtgtgcaaaattgaatttgcatgaagaaaatgaagatcttga 26325001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 26324397 - 26324435
Alignment:
Q  143 ttcatcatcttatggtgacttgattaatatattttcctc 181  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  26324397 ttcatcatcttatggtgacttgataaatatatcttcctc 26324435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 537
Target Start/End: Original strand, 44438654 - 44438709
Alignment:
Q  482 ttatcatatttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 537  Q
    |||| ||||||| |||| |||| || |||||||||||||| |||||||||||||||    
T  44438654 ttatgatatttaaaaaaaaaatacacatctcattttaggaggcaaatgatgtcttt 44438709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 44438492 - 44438558
Alignment:
Q  326 atataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtac 392  Q
    |||||||| |||||||||||||||    ||| ||| |||||||| | ||||||||||||||||||||    
T  44438492 atataggtctgcaaattttaaattgcgagaaaaaagtgaagatcgtaaatgatgacttgacaagtac 44438558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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