View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13797_low_9 (Length: 409)
Name: NF13797_low_9
Description: NF13797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13797_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 126 - 341
Target Start/End: Complemental strand, 26596381 - 26596153
Alignment:
| Q |
126 |
aagtcatttaacagtgttaaaatttggtttgacaggttatttgttcaaacatatcaccacagattttaaaacaaaaagaataaataaaaatacaatcact |
225 |
Q |
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| T |
26596381 |
aagtcatttaacagtgttaaaatttggtttgacaggttatttgt-caaacatatcaccacagattttaaaacaaaaagaataaataaaaatacaatcact |
26596283 |
T |
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| Q |
226 |
tgcagaagccatacttaagaatcatcatttttctttaatatatcctaataattgttgatag--------------aaaaacaattggttcaagccatgaa |
311 |
Q |
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| T |
26596282 |
tgcagaagccatacttaagaatcatcatttttctttaatatatcctaataattgttgatagttgaaaaaaaaaaaaaaaacaattggcttaagccatgaa |
26596183 |
T |
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| Q |
312 |
aataaataaataacataacaagaacaaaaa |
341 |
Q |
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| T |
26596182 |
aataaataaataacataacaagaacaaaaa |
26596153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 26596463 - 26596367
Alignment:
| Q |
10 |
atcatcagcatcaagatacttatacttaatctctttttccagcttttgaccaattgtgctgttcaaaaaatatccaacatataagtcatttaacagt |
106 |
Q |
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| T |
26596463 |
atcatcagcatcaagaaacttatacttaatctctttttccagcttttgaccaattgtgctgttcaaaaaatatccaacatataagtcatttaacagt |
26596367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 395
Target Start/End: Complemental strand, 26596115 - 26596076
Alignment:
| Q |
356 |
ttgataggataggatgaattggacacttacgttttccctg |
395 |
Q |
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| T |
26596115 |
ttgataggataggctgaattggacacttacgttttccctg |
26596076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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