View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13798_low_1 (Length: 568)
Name: NF13798_low_1
Description: NF13798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13798_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 10819918 - 10819580
Alignment:
| Q |
1 |
cagcatttgaaaatgtcgcagttggtgaataaagccaagaactatgtgtctgaaaaaattggtgatatggccaagccagaagcaagtgttactgacgtgg |
100 |
Q |
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| T |
10819918 |
cagcatttgaaaatgtcgcagttggtgaataaagccaagaactttgtgtctgaaaaaattggtgatatggccaagccagaagcaagtgttactgacgtgg |
10819819 |
T |
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| Q |
101 |
atttcaagaaagtgagcatgaacaatgttgaatatttggctaaggtttctgttaataatccttattcaactccaatccccatttgtgaggtcaaatactc |
200 |
Q |
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| T |
10819818 |
atttcaagaaagtgagcatgaacaatgttgaatatttggctaaggtttctgttaataatccttattcaactccaatccccatttgtgaggtcaaatactc |
10819719 |
T |
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| Q |
201 |
tttcaaaagcgccaacaggtactacatatatagac--agagttatgtttttacatgtatatatatgaaaattaacattaacttatatggctaacaagttt |
298 |
Q |
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| T |
10819718 |
tttcaaaagcgccaacaggtactacatatacagacagagagttatgtttttacatgtatatatatgaaaattaacattaacttatatggctaacaagttt |
10819619 |
T |
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| Q |
299 |
atatacatgtcaattatgtaacgtataagtgacataaat |
337 |
Q |
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| T |
10819618 |
atatacatgtcaattatgtaacgtataagtgacataaat |
10819580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 10819516 - 10819413
Alignment:
| Q |
437 |
aatgatgtgtcagtgtctttgtcgtgtccggtgtataatcaatatcat-cattgaatcaatatgttatttgtcaatgatctatttttccattattgatct |
535 |
Q |
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| T |
10819516 |
aatgacgtgtcagtgtttttgtcgtgtccagtgtataatcaatatcattcattgaatcaatatgttatttgtcaatgatctatttttccattattgatct |
10819417 |
T |
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| Q |
536 |
caac |
539 |
Q |
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| T |
10819416 |
caac |
10819413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 30029634 - 30029728
Alignment:
| Q |
126 |
tgttgaatatttggctaaggtttctgttaataatccttattcaactccaatccccatttgtgaggtcaaatactctttcaaaagcgccaacaggt |
220 |
Q |
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| T |
30029634 |
tgttgagtatttggctaaggtcaatgtttcaaatccttattctacttctattccaatttgtgagatcaagtactctttcaaaagtgctaacaggt |
30029728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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