View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13799_high_1 (Length: 593)
Name: NF13799_high_1
Description: NF13799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13799_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 27348553 - 27349141
Alignment:
| Q |
1 |
attatccctaagcaaacctaaactatgtatatattgcaactacaatgaaagtcttctcccaatggatgtggttgatctatacgtacacagatcaattgat |
100 |
Q |
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| T |
27348553 |
attatccctaagcaaacctaaactatgtatatattgcaactacaatgaaagtcttctcccaatggatgtggttgatctatac----acagatcaattgat |
27348648 |
T |
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| Q |
101 |
atcactgtcttctatcaaaaaccagctctttgcatatatcatatagatcaaagtctttttaatggtttcaaagaatctgaaaaacaccaatcaaaataat |
200 |
Q |
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| T |
27348649 |
atcactgtcttctatcaaaaaccagctctttgcatatatcatatagatcaaagtctttttaatggtttcaaagaatctgaaaaacaccaatcaaaataat |
27348748 |
T |
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| Q |
201 |
attatcaattttcatgatacacttagttataagtattcatatatctcattatcagcataacaattgaaatatttatgtttcacattatttgtcactttag |
300 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27348749 |
attatcaattttcatgatactctaagttataagtattcatatatctcattatcggtataacaattgaaatatttatgtttcacattatttgtcactttag |
27348848 |
T |
|
| Q |
301 |
attttcaaaacgatatttattaactttcttctacgactaaagaacatcatgaatacctttttcattttcaaaagattatccaagttccccttaggttcaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27348849 |
attttcaaaacgatatttattaactttcttctacgactaaagaacatcatgaataccttgttcattttcaaaagattatccaagttccccttaggttcaa |
27348948 |
T |
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| Q |
401 |
ttcatgggagcagaacatgaacacctgatgacagcatccaaaagcttaaaaacttgc-nnnnnnntcaagatttaacaattgcattgcaccagaaatata |
499 |
Q |
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| T |
27348949 |
ttcatgggagcagaacatgaacacctgatgacagcatccaaaagcttaaaaacttgcaaaaaaaatcaagatttaacaattgcattgcaccagaaatata |
27349048 |
T |
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| Q |
500 |
aagtctttttatgtttaccttctttgaccccataaattctccacagattccaactttctccattctgagcacttgtcacactgtatccattgct |
593 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27349049 |
aagtc-ttttatgtttaccttctttgaccccataaattctccacagattccaactttctccattctgagcacttgtcacactgtatccattgct |
27349141 |
T |
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