View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13799_high_3 (Length: 424)
Name: NF13799_high_3
Description: NF13799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13799_high_3 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 36847210 - 36846788
Alignment:
| Q |
1 |
tcatcatctggatcatacctcctcggctcctatgtctatgtgtcaatggtatcaacaagtagcctacaaagaaaattaaatatattgaggtgtttcatat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36847210 |
tcatcatctggatcatacctcctc-----ctatgtctatgcgtcaatggtatcaacaagtagcctacaatgaaaattaaatatattgaggtgtttcatat |
36847116 |
T |
|
| Q |
101 |
aagaaaaagtaacacaaaaataagtttgaccgtataaaccaagtgcaacatgacatgaataagtttgtattacctcgtcggcggccataccaggcatagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36847115 |
aagaaaaagtaacacaaaaataagtttgaccgtataaaccaaatgcaacatgacatgaataagtttgtattacctcgtcggcggccataccaggcatagg |
36847016 |
T |
|
| Q |
201 |
ccattggacttgtaagcaggctgtgggaaacgacaagtagaagaaggtagagaccaagac----catgtttgaaagaggacatggttaaattagtgaata |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36847015 |
ccattggacttgtaagcaggctgtgggaaacgacaagtagaagaaggtagagaccaagaccatgcatgtttgaaagaggacatggttaaattagtgaata |
36846916 |
T |
|
| Q |
297 |
aaatgcaattatctgcaaaataagtaaataaaagaagttattcattagtcagtgtgttagcaaagcaagaggaatatcgaatacatggtgctcatgttat |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36846915 |
aaatgcaattatctgcaaaataagtaaataaaagaagttattcattggtcagtgtgttagcaaagcaagaggaatatcgaatacatggtgctcatgttat |
36846816 |
T |
|
| Q |
397 |
attatcaagcactctcttaacaagttta |
424 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
36846815 |
attatcaagtactctcttaacaagttta |
36846788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 144 - 314
Target Start/End: Complemental strand, 36839494 - 36839326
Alignment:
| Q |
144 |
tgcaacatgacatgaataagtttgtatt-acctcgtcggcggccataccaggcataggccattggacttgtaagcaggctgtgggaaacgacaagtagaa |
242 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||| |||| || ||||||||||||| | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36839494 |
tgcaacatgacacaaataaatttgtatttacctcgacggc---caaaccaggcataggcaactggacttgtaagcaggctgtgggaaaagacaagtagaa |
36839398 |
T |
|
| Q |
243 |
gaaggtagagaccaagaccatgtttgaaagaggacatggttaaattagtgaataaaatgcaattatctgcaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
36839397 |
gaaggtagagaccaagaccatgtttgaaggatgacatggttgaattagtgaatagaatgcaattatctgcaa |
36839326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 36835585 - 36835508
Alignment:
| Q |
205 |
tggacttgtaagcaggctgtgggaaacgacaagtagaagaaggtagagaccaagaccatgtttgaaagaggacatggt |
282 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36835585 |
tggacttgtaaggaggatgtgggaaaagacaagtagaagaaggtagagaccaagaccatgtttgaaagaggacatggt |
36835508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University