View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13799_high_4 (Length: 409)
Name: NF13799_high_4
Description: NF13799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13799_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 24 - 399
Target Start/End: Original strand, 45283550 - 45283914
Alignment:
| Q |
24 |
atgatgtatgtatgtatctatctatattgcctctaatattaaatttcttttactttctacaactgtaactaacttttatgcatctgcatgtgaatataga |
123 |
Q |
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| T |
45283550 |
atgatgtatgtatgtatctatctatattgcctctaatattaaatttcttttactttctacaactgtaactaacttttatgcatctgcatgtgaatataga |
45283649 |
T |
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| Q |
124 |
catgattaaagttaagttaaattgagttcatatttaatggcatatgtatatagagattaattttcatgcaccgtgggcgtacaactttttataccgtcta |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283650 |
catgattaaagttaagttaaattgagttcatatttaatgcc--atgtatatagagattaattttcatgcaccgtgggcgtacaactttttataccgtcta |
45283747 |
T |
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| Q |
224 |
ctaatcataaattaccgtctatatgagtttttnnnnnnngatagatagatatgtttaaagtcaaatatggggttagtgatttagaggttgtacaaaatgt |
323 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45283748 |
ctaatcataaattaccg--tatatgagttttt-----aagatagatagatatctttaaagtcaaatat--ggttagtgatttagaggttgtacaaaatgt |
45283838 |
T |
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| Q |
324 |
gcattaaatcaatgtatatgtttccagattataagctggagattttggggttttgactttcttgagactctctctg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45283839 |
gcattaaatcaatgtatatgtttccagattataagctggcgattttggggttttgactttcttgagactctctctg |
45283914 |
T |
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