View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13799_high_5 (Length: 324)
Name: NF13799_high_5
Description: NF13799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13799_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 28681151 - 28681451
Alignment:
| Q |
7 |
tccaagaatataactatcaccagcacacattcaactattgcttttaaagagtagtacaagaatgtgtttaaacaagtatattttatcattgctcttttgt |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28681151 |
tccaaaaatataactatcaccagcacacattcaactattgcttttaaagagtagtacaagaatgtgtttaaacaagtatatgttatcattgctcttttgt |
28681250 |
T |
|
| Q |
107 |
aaatttgaagaagtttttgaaacttgtcttaatactagtgataactattcatgtagtagtgtatgaggtgaaagataatgacattttaagaattacaaaa |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28681251 |
aaatgtgaagaagtttttgaaacttgtcttaatactaatgataactattcatgtagtagtgtataaggtgaaagataatgacattttaagaattacaaaa |
28681350 |
T |
|
| Q |
207 |
atatcaaaattttataagaaatgtctagaaatttacattagataatatttagcttgaagtcaataaagaccaataagcagtggcgaatcttaagttaatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28681351 |
atatcaaaattttataagaaatgtctagaaatttacattagataatatttagcttgaagtcaataaagaccaataaacagtggcgaatcttaagttaatt |
28681450 |
T |
|
| Q |
307 |
t |
307 |
Q |
| |
|
| |
|
|
| T |
28681451 |
t |
28681451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University