View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13799_high_8 (Length: 243)
Name: NF13799_high_8
Description: NF13799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13799_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 53066555 - 53066735
Alignment:
| Q |
48 |
gtattatgaactagtgttttgatatagttaccttaatggagttaaagattgttgttgttgatcatcgtgttgtggctgtgtgcaactgcagtagaccacc |
147 |
Q |
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| T |
53066555 |
gtattatgaactagtgttttgatatagttaccttaatggagttaaagattgttgttgttgatcatcgtgttgtggctgtgtgcaactgcagtagaccacc |
53066654 |
T |
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| Q |
148 |
acagtcttcctcgtcctgctgctcctgaaatttgggttaagaagtgttggtaaagggatgaggaagctttgctgtgacaag |
228 |
Q |
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| T |
53066655 |
acagtcttcctcgtcctgctgctcctgaaatttgggttaagaagtgttggtaaagggatgaggaagctttgctgtgacaag |
53066735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 53066507 - 53066538
Alignment:
| Q |
1 |
atatatacagtagttaagcagcatgcaaatat |
32 |
Q |
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| T |
53066507 |
atatatacagtagttaagcagcatgcaaatat |
53066538 |
T |
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