View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13799_high_9 (Length: 239)
Name: NF13799_high_9
Description: NF13799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13799_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36846763 - 36846542
Alignment:
| Q |
1 |
cttggagagacacacgacactgcatgtataaannnnnnnagattaaaactttcatcacttattgcataaaaatcatattttccacatgaatacattgaag |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36846763 |
cttggagacacacacgacactgcatgtataaatttttttagattaaaactttcatcacttattgcataaaaatcatattttccacatgaatacattgaag |
36846664 |
T |
|
| Q |
101 |
ttcaactttcggtatttagacatgagaaaattcacatatcgctcaaatatgaacatcaaaaccaagctttcctttagaacaacaaaaactcctttaattc |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36846663 |
ttcaactttcgatatttagacatgagaaagttcacatatcgctcatatatgaacatcaaaaccaagctttcctttagaacaacaaaaactcctttaattc |
36846564 |
T |
|
| Q |
201 |
atctaatttagaaccttttctt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36846563 |
atctaatttagaaccttttctt |
36846542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University