View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_high_1 (Length: 812)
Name: NF1379_high_1
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 132 - 558
Target Start/End: Original strand, 41564808 - 41565242
Alignment:
| Q |
132 |
aaggaaacaatgtaaaaaatttgatcattcatcaccacattatttttcaagnnnnnnnctctcaacaaaataaccggtttggtttattattataattata |
231 |
Q |
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| T |
41564808 |
aaggaaacaatgtaaaaaatttgatcattcatcaccacaatatttttcaagtttttttctctcaacaaaataaccggtttggtttattattataattgta |
41564907 |
T |
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| Q |
232 |
tccaggcaatttttagattagtgtattttaggagtttcatataattgagtagattaaaaagttaagtcatgaaattctctcacttaatggaatcatattt |
331 |
Q |
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| T |
41564908 |
tccaggcaatttttagattagtgtattttaggagtttcttataattgagtagataaaaaagttaagtcatgaaattctctcacttaatggaatcatattt |
41565007 |
T |
|
| Q |
332 |
tagcttggattcaatatattcgttgagatttgagttacgttaaagaataatgttaatgatagaagtctcacgtta-aagaatatcagttacttcatagtc |
430 |
Q |
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| T |
41565008 |
tagcttggattcaatatattcgttgacatttgagttacgttaaagaataatgttaatgatagaagtctcacgttattagagtatcagttacttcatagtc |
41565107 |
T |
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| Q |
431 |
aagcaatcaagtttcttcacactcaatcaac---taacttgtcaaaacttgtaaaactaataaggaaatgctatgttgtatgaaaaacaaacaggcacaa |
527 |
Q |
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| T |
41565108 |
aagcaatcaagtttcttcacactcaatcaactaataacttgtcaaaacttgtaaaactaataaggaaatgctatgttgtatgaaaaacaaacaggcacaa |
41565207 |
T |
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| Q |
528 |
taaatgaaatac----acgtatcacaatctcttga |
558 |
Q |
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| T |
41565208 |
taaatgaaatacacgtacgtatcacaatctcttga |
41565242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 576 - 803
Target Start/End: Original strand, 41565567 - 41565794
Alignment:
| Q |
576 |
tattccaacaaatcatatctcttggtgctgcgacgaggcgcttctgtccttcgcggcaccatttctccatcctttccgacggtcggtcctgccttcactc |
675 |
Q |
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| T |
41565567 |
tattccaacaaatcatatctcttggtgctgcgacgaggcgcttctatcctccgcggcaccatttctccatcctttccgacagtcagtcctgccttcactc |
41565666 |
T |
|
| Q |
676 |
tgcttccttattccgtcgtcacatgttgtgtggtgttctatgttcgtcggcgtttatggaagatccatccttgccggtggtttgaaggttttaggttgtt |
775 |
Q |
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| T |
41565667 |
tgcttccttattccgccgtcacctgttgtgtggtgttctatgttcgtcggcgtttatggaagatccatccttgccggtggtttgaaggttttaggttgtt |
41565766 |
T |
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| Q |
776 |
gcggtttgctccggttccagatctgtgg |
803 |
Q |
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| T |
41565767 |
gcggtttgctccggttccagatctgtgg |
41565794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 41564714 - 41564792
Alignment:
| Q |
30 |
tttaggctacaaatgaaacatcaccgtccacccccatccaccaacttcacatagttggacaaggatcaagattctctct |
108 |
Q |
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| T |
41564714 |
tttaggctacaaatgaaacatcaccgtccacccccatccaccaacttcacatagttggacaaggatcaagattctctct |
41564792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 750 - 793
Target Start/End: Complemental strand, 1030220 - 1030177
Alignment:
| Q |
750 |
cggtggtttgaaggttttaggttgttgcggtttgctccggttcc |
793 |
Q |
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| T |
1030220 |
cggtggtttgaaggttttaggttgctgtggtttgctccggttcc |
1030177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 725 - 791
Target Start/End: Original strand, 48562767 - 48562835
Alignment:
| Q |
725 |
gcgtttatggaagatccatcctt-gccggtggtttgaaggttttaggttg-ttgcggtttgctccggtt |
791 |
Q |
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| T |
48562767 |
gcgtttatggaagatccatccttcgtcgatggtttgaaggttttaggttgtttttggtttgctccggtt |
48562835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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