View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_high_13 (Length: 562)
Name: NF1379_high_13
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 134 - 554
Target Start/End: Original strand, 29537600 - 29538020
Alignment:
| Q |
134 |
ccttgctcagagaactgagataaatttttccatattgaaagaatcagatatccgggaacggcaggaagatgatatcaggagtgtcgcagcagttctttcc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29537600 |
ccttgctcagagaactgagataaatttttccatattgaaagaatcagatatccgggaacggcaggaagatgatatcaggagtgtcgcagcagttctttcc |
29537699 |
T |
|
| Q |
234 |
ataccacctgttgctgcaagcatcctacttcgtcattataattggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacggagtccgaagaa |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29537700 |
ataccacctgttgctgcaagcatcctacttcgtcattataattggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacggagtccgaagaa |
29537799 |
T |
|
| Q |
334 |
aagttggcttgttggagaagccagcttataagaatcctgatgctaacaaaatgcctaagcttacttgcggcatctgttttgaagcttatcgtccttctaa |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29537800 |
aagttggcttgttggagaagccagcttataagaatcctgatgctaacaaaatgcctaagcttacttgcggcatctgttttgaagcttatcgtccttctaa |
29537899 |
T |
|
| Q |
434 |
gattcacactgcttcttgtggtcatccgtactgttcttcatgctggggaggatatattggcacttcaatcaacgatggtctgggatgcttgatgctgaga |
533 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29537900 |
gattcacactgcttcttgtggtcatccgtactgttcttcatgctggggaggatatattggcacttcaatcaacgatggtctgggatgcttgatgctgaga |
29537999 |
T |
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| Q |
534 |
tgtcctgatcccgcctatgct |
554 |
Q |
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|||||||||||||||| |||| |
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| T |
29538000 |
tgtcctgatcccgcctgtgct |
29538020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 146 - 547
Target Start/End: Original strand, 29552742 - 29553134
Alignment:
| Q |
146 |
aactgagataaatttttccatattgaaagaatcagatatccgggaacggcaggaagatgatatcaggagtgtcgcagcagttctttccataccacctgtt |
245 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||||||||| ||| |
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| T |
29552742 |
aactgagataaatttttccatattgaacgaatcagatatccgggaacagcaggaagatgatattagtagtgtcgcggcagttctttccataccaccagtt |
29552841 |
T |
|
| Q |
246 |
gctgcaagcatcctacttcgtcattataattggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacggagtccgaagaaaagttggcttgt |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29552842 |
gctgcaagcatcctacttcgtcattataattggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacggagtccgaagaaaagttggtttgt |
29552941 |
T |
|
| Q |
346 |
tggagaagccagcttataagaatcctgatgctaacaaaatgcctaagcttacttgcggcatctgttttgaagcttatcgtccttctaagattcacactgc |
445 |
Q |
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| T |
29552942 |
tggagaagccggtttgtgagaatcatgatgctaa---------aaagcttacttgcggcatctgttttgaagcttatcgtctttctaagattcacactgc |
29553032 |
T |
|
| Q |
446 |
ttcttgtggtcatccgtactgttcttcatgctggggaggatatattggcacttcaatcaacgatggtctgggatgcttgatgctgagatgtcctgatccc |
545 |
Q |
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|||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29553033 |
ttcttgcggtcatccgtactgtttttcatgctggagaggatatattggcacctcaatcaacgatggtccgggatgcttgatgctgagatgtcctgatccc |
29553132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 29537496 - 29537537
Alignment:
| Q |
30 |
gttgaatccctcgatgacgatttctacggtggtgaaaccgaa |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
29537496 |
gttgaatccctcgatgacgatttctacggtggtgaaaccgaa |
29537537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 151 - 278
Target Start/End: Original strand, 42188464 - 42188591
Alignment:
| Q |
151 |
agataaatttttccatattgaaagaatcagatatccgggaacggcaggaagatgatatcaggagtgtcgcagcagttctttccataccacctgttgctgc |
250 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| |
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| T |
42188464 |
agataaattttgccatattgaaagaatcagatatccgggatcggcaggaagatgatatcagtagtgtcgcaacagttctttccataccaccagttgctgc |
42188563 |
T |
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| Q |
251 |
aagcatcctacttcgtcattataattgg |
278 |
Q |
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| T |
42188564 |
aagcatcctacttcgtcattacaattgg |
42188591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 391 - 484
Target Start/End: Original strand, 42188960 - 42189053
Alignment:
| Q |
391 |
agcttacttgcggcatctgttttgaagcttatcgtccttctaagattcacactgcttcttgtggtcatccgtactgttcttcatgctggggagg |
484 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||| |
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| T |
42188960 |
agcttacttgcggcatctgttttgaagcttatcgtccttctaagattcacaatgcttcttgcggccatccgtactgtttttcatgctggggagg |
42189053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 277 - 376
Target Start/End: Original strand, 42188734 - 42188833
Alignment:
| Q |
277 |
ggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacggagtccgaagaaaagttggcttgttggagaagccagcttataagaatcctgatgc |
376 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
42188734 |
ggaatgtcagtaatgttaatgatgcttggtttgctgacgaagacagagtccgaagaaaagttggcttgttggagaagccagtttacgagaatcctgatgc |
42188833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 482 - 544
Target Start/End: Original strand, 42189222 - 42189284
Alignment:
| Q |
482 |
aggatatattggcacttcaatcaacgatggtctgggatgcttgatgctgagatgtcctgatcc |
544 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
42189222 |
aggatatattggcacttcaattaacgatggtcctggatgcttgatgctgagatgtcctgatcc |
42189284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 42187705 - 42187746
Alignment:
| Q |
30 |
gttgaatccctcgatgacgatttctacggtggtgaaaccgaa |
71 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42187705 |
gttgaatccctcgatgacgatttctacagtggtgaaaccgaa |
42187746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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