View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1379_high_31 (Length: 400)
Name: NF1379_high_31
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 392
Target Start/End: Complemental strand, 30474495 - 30474120
Alignment:
| Q |
15 |
caagtagcaaaacaagccaacaggtaactagatttcactattctgatcacacacacaacaccatagatgttattcattcaactttaaacaggcaagtaaa |
114 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30474495 |
caaggagcaaaacaagacaacaggtaactagatttcactattctgatcacacacacaacaccatagatgttattcattcaactttaaacaggcaagtaaa |
30474396 |
T |
|
| Q |
115 |
atcatattaaaataaaaggaacaaaagtttatcagcccatgagccaaaaaagtaaactagatgatcattgatcatcaaatgagtaaaatttgaagggaca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30474395 |
atcatattaaaataaaaggaacaaaagtttatcagcccatgagccaaaaaagtaaacta--tgatcattgatcatcaaatgagtaaaatttgaagggaca |
30474298 |
T |
|
| Q |
215 |
aaaacacttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtctt |
314 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
30474297 |
aaaacacttacacaaatcaattcttttcgagcatccaacaactcatcattactccgacgctccttaatgattagtgttaggttcaaatcatttaagtctt |
30474198 |
T |
|
| Q |
315 |
caattaactcttctttgtcacttaaatccatccgcaaagcatctacctttttcaaaagatcctcatcgtcttcatctc |
392 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
30474197 |
caagtaactcttctttgtcacttaaatccatccgcaaagcatctacctctttcaaaagatcctcatcttcttcatctc |
30474120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 222 - 363
Target Start/End: Complemental strand, 30466046 - 30465905
Alignment:
| Q |
222 |
ttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaattaa |
321 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||| || |||| ||| ||||||| | | |
|
|
| T |
30466046 |
ttacatgaatcaatatttttcgagcatattgcaactcatcattactcttatgctccttaatgattagtttttggttaaattcttctaactcttcaagtga |
30465947 |
T |
|
| Q |
322 |
ctcttctttgtcacttaaatccatccgcaaagcatctacctt |
363 |
Q |
| |
|
|||||||||||| || |||| |||| |||||||||||||||| |
|
|
| T |
30465946 |
ctcttctttgtctctcaaattcatcagcaaagcatctacctt |
30465905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 371
Target Start/End: Complemental strand, 30447249 - 30447098
Alignment:
| Q |
220 |
acttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaatt |
319 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||||||| | | |||||||| || | |
|
|
| T |
30447249 |
acttacactgatcaattcttttcgagcatcttgcagctcatcgttactcttacgctccttgatgattagtgtttggttcagtgcatctaagtcttgaagt |
30447150 |
T |
|
| Q |
320 |
aactcttctttgtcacttaaatccatccgcaaagcatctacctttttcaaaa |
371 |
Q |
| |
|
||| ||| || || |||||| |||| ||||| |||||||||| ||||||| |
|
|
| T |
30447149 |
gactgttccttctcccttaaacccatatgcaaatcatctaccttcttcaaaa |
30447098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University