View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_high_33 (Length: 391)
Name: NF1379_high_33
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 296 - 382
Target Start/End: Original strand, 32539518 - 32539604
Alignment:
| Q |
296 |
caatcttacaatgtaacaatgctaccgtctcctccatgcatgttttgttgaatattaacactaacaagcttttttagaagttcatct |
382 |
Q |
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| T |
32539518 |
caatcttacaatgtaacaatgctaccgtctcctccatgcatgttttgttgaatattaacactaacaagcttttttagaagttcatct |
32539604 |
T |
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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 32539384 - 32539460
Alignment:
| Q |
64 |
tcatccccttcacatgtccctaacatatataagcatttctttttcatcatataatattacaaacttgggtatttaatttacttc |
147 |
Q |
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| T |
32539384 |
tcatccccttcacatgtccctaacata----agcatttctttttcatcatata---ttacaaacttgggtatttaatttacttc |
32539460 |
T |
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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 32539457 - 32539503
Alignment:
| Q |
181 |
cttcgctattccctaattattgtcttaacttctcataaaaccaattt |
227 |
Q |
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| T |
32539457 |
cttcgctattccctaattattgtcttaacttcacataaaaccaattt |
32539503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 668348 - 668398
Alignment:
| Q |
18 |
aacacgtacaagccttcttcaaccaacacaactccttc-catagagatcat |
67 |
Q |
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| T |
668348 |
aacacgtacaagccttattcaaccaacacaactccttctcaaagagatcat |
668398 |
T |
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