View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1379_high_38 (Length: 385)
Name: NF1379_high_38
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 61 - 377
Target Start/End: Original strand, 35073869 - 35074164
Alignment:
| Q |
61 |
attgttaagagaaactgacctagctggtcaacgacggtccaaaattaatctcccatatccccatagatgcggcttcggttctccctaaagccgctaaaaa |
160 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35073869 |
attgttaaaagaaactgacctagctggtcaacgacggtccaaaattaatctcccatatccccatagatgcggcttcggttctccctaaagccactaaaaa |
35073968 |
T |
|
| Q |
161 |
tcccacttggtgggcaacactcctcaggatttaggtggtagttactccggcaccactaatttttgttgcataatttgtcttcccaatttgttctgctgtg |
260 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35073969 |
tcccactta---------------------ttaggtggtagttactccggcaccactaatttttgttgcataatttgtcttcccaatttgttctgctgtg |
35074047 |
T |
|
| Q |
261 |
gcttggtgcattgatttattttttgttgaaattcctgaattttgaatggtattgtattgaatcaaccagctataaaattcaaagtgtaaaatgtggtaaa |
360 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35074048 |
gcttggtgcattgacttattttttgttgaaattcctgaattttgaatggtattgtattgaatcaaccagctataaaattcacagtgtaaaatgtggtaaa |
35074147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49011323 - 49011367
Alignment:
| Q |
1 |
acgaagccatatatcccacataaaatgtgacatattctagctact |
45 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49011323 |
acgaagccatatatcccacataaaatttgacatattctagctact |
49011367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 38183978 - 38184014
Alignment:
| Q |
9 |
atatatcccacataaaatgtgacatattctagctact |
45 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38183978 |
atatatcccacataaaatgtgacacattctagctact |
38184014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University