View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_high_4 (Length: 643)
Name: NF1379_high_4
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_4 |
 | |
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| [»] scaffold0001 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 79 - 639
Target Start/End: Complemental strand, 21533683 - 21533123
Alignment:
| Q |
79 |
ccacagaccaaatatcaattggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaa |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533683 |
ccacagaccaaatatcaattggagttgaatattggccacattcaaacaataactcaggtgccctataaaaccgagttgctacctgtgacaatagtgtaaa |
21533584 |
T |
|
| Q |
179 |
agatatttcaggaaccattacattacatctactttcattataagatctactgtcagaaaccattacaatatctcaggtgtttttggaaataaataaagac |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533583 |
agatatttcaggaaccattacattacatctactttcattataagatctactctcagaaaccattacaatatctcaggtgtttttggaaataaataaagac |
21533484 |
T |
|
| Q |
279 |
aactactatggttatatcaggaaccattacatctactttcagtataagatcacaaactattccattagaattgaccactcttgtgaataactatttcttt |
378 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21533483 |
aactactatggttatatcaggaaccattacatcaactttcattataagatcacaaactattccattataattgaccactcttgtgaataactatttcttt |
21533384 |
T |
|
| Q |
379 |
tttaatccctttcagttactctagttataatgctttcaaatcatgacttgtctctgtgtatatctatgtccaagtgtcctaatcaaaaataacattgttt |
478 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533383 |
tttaatccctttcagttactctagttgtaatgctttcaaatcatgacttgtctctgtgtatatctatgtccaagtgtcctaatcaaaaataacattgttt |
21533284 |
T |
|
| Q |
479 |
tccaaaattgacatataactagatctcttacgcaaatggtcatgagttaaattcttgactagtgcgtatagaagagcatctgtttcgagaagagacaact |
578 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533283 |
tccaaaattgacatataactagatctcttacgcatatggtcatgagttaaattcttgactagtgcgtatagaagagcatctgtttcgagaagagacaact |
21533184 |
T |
|
| Q |
579 |
tataatgcaggaaaggactaactctgacacaacaatttgaatcaccacaactggctaacat |
639 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21533183 |
tataatgcaggaaagtactaactccgacacaacaatttgaatcaccacaactggctaacat |
21533123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 2073 - 1952
Alignment:
| Q |
79 |
ccacagaccaaatatcaattggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||| ||||||||||||| |
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| T |
2073 |
ccacagaccaaatatcaattggagttgaatattggccacattcaaacaatatctcaggtgctgtatacaaccgagttgctacctgttacaatagtgtaaa |
1974 |
T |
|
| Q |
179 |
agatatttcaggaaccattaca |
200 |
Q |
| |
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||| |||||||||||||||||| |
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|
| T |
1973 |
agacatttcaggaaccattaca |
1952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 9685 - 9564
Alignment:
| Q |
79 |
ccacagaccaaatatcaattggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaa |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || | || |||||||||||||||||| ||||||||||| | |
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| T |
9685 |
ccacagaccaaatatctattggagttgaatattggccacattcaaacaatatctcaggtgctgtttacaaccgagttgctacctgttacaatagtgtata |
9586 |
T |
|
| Q |
179 |
agatatttcaggaaccattaca |
200 |
Q |
| |
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||| |||||||||||| ||||| |
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| T |
9585 |
agacatttcaggaaccgttaca |
9564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 23417 - 23296
Alignment:
| Q |
79 |
ccacagaccaaatatcaattggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaa |
178 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || | || |||||||||||||||||| ||||||||||| | |
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| T |
23417 |
ccacagaccaaatatctattggagttgaatattggccacattcaaacaatatctcaggtgctgtttacaaccgagttgctacctgttacaatagtgtata |
23318 |
T |
|
| Q |
179 |
agatatttcaggaaccattaca |
200 |
Q |
| |
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||| |||||||||||| ||||| |
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|
| T |
23317 |
agacatttcaggaaccgttaca |
23296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 295 - 472
Target Start/End: Original strand, 41574264 - 41574446
Alignment:
| Q |
295 |
tcaggaaccattacatctactttcagtataagatcacaaactattccattagaattgaccactcttgtgaataactatttctttttt--aatccc----- |
387 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| ||| |||||| ||| |||||||||| ||||||||| ||| |||||| ||| | |
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| T |
41574264 |
tcaggaaccattacatctactttcattataagatcacacactc--ccattataatcgaccactcttctgaataacttttttttttttttaattcagtaat |
41574361 |
T |
|
| Q |
388 |
tttcagttactctagttataatgctttcaaatcatgacttgtctctgtgtatatctatgtccaagtgtcctaatcaaaaataaca |
472 |
Q |
| |
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||| | ||||||||| |||||||| ||||||||||||||||||||||||||| |||||| | | | |||||||| |||||||||| |
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|
| T |
41574362 |
ttttaattactctagctataatgcattcaaatcatgacttgtctctgtgtatgtctatgacaatgcgtcctaataaaaaataaca |
41574446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 394 - 502
Target Start/End: Original strand, 3400811 - 3400919
Alignment:
| Q |
394 |
ttactctagttataatgctttcaaatcatgacttgtctctgtgtatatctatgtccaagtgtcctaatcaaaaataacattgttttccaaaattgacata |
493 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||| | | |||||||||||| | |
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| T |
3400811 |
ttactctatctataatgcattcaaatcatgacttgtctgtgtgtatatctatgtccacgtgtcccaataaaaaataacattatgtgccaaaattgacaaa |
3400910 |
T |
|
| Q |
494 |
taactagat |
502 |
Q |
| |
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||| ||||| |
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|
| T |
3400911 |
taattagat |
3400919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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