View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_high_41 (Length: 377)
Name: NF1379_high_41
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 349
Target Start/End: Original strand, 39751016 - 39751363
Alignment:
| Q |
7 |
tccaacaatattaactaactaattgatttcatgtttcaatttagagcataggatatgcaacattggcaaaccttgctcctcaatatggactttgtaagct |
106 |
Q |
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| T |
39751016 |
tccaacaatattaactaactaattgatttcatgtttcaatttagagcataggatatgcaacattggcaaaccttgctcctcaatatggactttgtaagct |
39751115 |
T |
|
| Q |
107 |
acttttttaaaatatatgtttttcttccccttatcttcttctaaggaaattatattataattgatttactttatatacaacttttgcgcaaaaataaaat |
206 |
Q |
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| T |
39751116 |
acttttttaaaatatatgtttttcttccccttatcttcttctaaggaaattatattataattgatttactttatatacaacttttgcgcaaaaataaaat |
39751215 |
T |
|
| Q |
207 |
tacattatcaattaattataactatatgatcataatcaatttgtgcgg-----aatgaaatgaaatagatacgagtgttgtaccaccgcttatatacgct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751216 |
tacattatcaattaattataactatatgatcataatcaatttgtgcggaatgaaatgaaatgaaatagatacgagtgttgtaccaccgcttatatacgct |
39751315 |
T |
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| Q |
302 |
gtaatgggaacatcaagagaaatagcaattggtcctgtggccgtggtt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751316 |
gtaatgggaacatcaagagaaatagcaattggtcctgtggccgtggtt |
39751363 |
T |
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