View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_high_43 (Length: 361)
Name: NF1379_high_43
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 108 - 340
Target Start/End: Complemental strand, 37842869 - 37842637
Alignment:
| Q |
108 |
ataccattgctttagatctttcgtatctgattccattctatggaaacgccttcgaattattattaccagcacaacagaaatcaatatagaggatcctatt |
207 |
Q |
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| T |
37842869 |
ataccattgctttagatcttccgtatctgattcctttctaaggaaacgcctttgaattattattaccagcacaacagaaatcaatatagaggatccaatt |
37842770 |
T |
|
| Q |
208 |
tcaatcatcacaatttgaacattactgatacctttgtgattggttgatttggagacacatgaatttacataactagttttaatgcaacttaaacaactga |
307 |
Q |
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| T |
37842769 |
tcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggagacacatggatttacataactagttttaatgcaacttaaacaactga |
37842670 |
T |
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| Q |
308 |
cacatatgataggattacccatgaatgatgatg |
340 |
Q |
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| T |
37842669 |
cacatatgagaggattacccatgaatgatgatg |
37842637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 161 - 340
Target Start/End: Complemental strand, 28089685 - 28089507
Alignment:
| Q |
161 |
gaattattattaccagcacaacagaaatcaatatagaggatcctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgatttgga |
260 |
Q |
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| T |
28089685 |
gaattattatcaccagcacatcagaaatcaatattgaggatccaagttctatcatcacaatttgaacattaccgataactttatgatcggttgatttgta |
28089586 |
T |
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| Q |
261 |
gacacatgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatg |
340 |
Q |
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| T |
28089585 |
gacacatggatttacataactagttttaatgcaa-ttcaacaactaaaacatatgagaggattgcccatgaatgatgatg |
28089507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 158 - 340
Target Start/End: Complemental strand, 37831496 - 37831314
Alignment:
| Q |
158 |
ttcgaattattattaccagcacaacagaaatcaatatagaggatcctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgattt |
257 |
Q |
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||||||| ||||||| || || | ||||||| ||||| |||||||| | ||| |||| ||||||||||||||||| |||||||||||||| ||||| || |
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| T |
37831496 |
ttcgaatcattattagcatcagagcagaaataaatattgaggatccaagttctatcaacacaatttgaacattaccgatacctttgtgatcagttgactt |
37831397 |
T |
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| Q |
258 |
ggagacacatgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatg |
340 |
Q |
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| T |
37831396 |
gtagacacatggatttacataactagtttcaatgcaactcaaacaactaacacataggagaggactacccatgaatgatgatg |
37831314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 158 - 340
Target Start/End: Complemental strand, 37837200 - 37837018
Alignment:
| Q |
158 |
ttcgaattattattaccagcacaacagaaatcaatatagaggatcctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgattt |
257 |
Q |
| |
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|||||| |||||| |||| |||| ||||||||||||| |||||||| | | | ||||| ||||||||||||| |||||||||||| |||| |||||||| |
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| T |
37837200 |
ttcgaaatattatcaccatcacagcagaaatcaatattgaggatccaagtactatcattacaatttgaacataactgatacctttatgatcagttgattt |
37837101 |
T |
|
| Q |
258 |
ggagacacatgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatg |
340 |
Q |
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| T |
37837100 |
gtagacacatggatttacattactagttataatgcaattcaaacaacttacacataggaaaggattacccatgaatgatgatg |
37837018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 161 - 338
Target Start/End: Complemental strand, 36865944 - 36865767
Alignment:
| Q |
161 |
gaattattattaccagcacaacagaaatcaatatagaggatcctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgatttgga |
260 |
Q |
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|||||||||| ||| |||| |||||| ||||| |||| ||| | ||| ||||||||||||||||||||| ||||||||||||||| |||| |||| | |
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| T |
36865944 |
gaattattatcaccgccacaccagaaacaaatattgagggtccaagttctatcatcacaatttgaacattaatgatacctttgtgatcagttggtttgta |
36865845 |
T |
|
| Q |
261 |
gacacatgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatga |
338 |
Q |
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|| ||||| ||||| | |||||||||||| |||| | ||||| || ||||||| || ||||||||||||||| ||||| |
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| T |
36865844 |
gatacatggatttataaaactagttttaaagcaattcaaacatctaacacataggagaggattacccatgaacgatga |
36865767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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