View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_high_63 (Length: 276)
Name: NF1379_high_63
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_63 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 40341586 - 40341852
Alignment:
| Q |
1 |
tgtaaactttgtctgctcaagtctgtttcattttttatgtggatgctatgatgtgggggtaattcaaccaatagtaacagtttttcgaaacttaactaac |
100 |
Q |
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| T |
40341586 |
tgtaaactttgtctgctcaagtctgtttcattttttatgtggatgctatgatgtgggggtaattcaaccaatagtaacagtttttcgaaacttaactaac |
40341685 |
T |
|
| Q |
101 |
tagtcattttaggggctgtcctttatgtaaattaattaccacaactattttgtagatatgattgcattttggtatctttgatgtgattatcgtggattta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40341686 |
tagtcattttaggggctgtcctttatgtaaattaattaccacaactattttgtagatatgattgcatttcggtatctttgatgtgattatcgtggattta |
40341785 |
T |
|
| Q |
201 |
atggaatgctctgattcttcttagttacattgtttagaataatgccattggcaatgtctgtctctgc |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40341786 |
atggaatgctctgattcttcttagttacattgtttagaataatgccattggcaatgtctgtctctgc |
40341852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 29547608 - 29547646
Alignment:
| Q |
197 |
tttaatggaatgctctgattcttcttagttacattgttt |
235 |
Q |
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| T |
29547608 |
tttaatggaatgctctgattcttcttagttacattgttt |
29547646 |
T |
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