View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1379_high_66 (Length: 267)

Name: NF1379_high_66
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1379_high_66
NF1379_high_66
[»] chr4 (17 HSPs)
chr4 (1-233)||(2733215-2733447)
chr4 (88-223)||(17883973-17884107)
chr4 (145-226)||(3155505-3155586)
chr4 (173-232)||(30066881-30066940)
chr4 (146-232)||(2987085-2987171)
chr4 (149-214)||(6364063-6364128)
chr4 (149-190)||(8422928-8422969)
chr4 (92-165)||(28581945-28582017)
chr4 (145-233)||(26520316-26520404)
chr4 (145-189)||(52326196-52326240)
chr4 (160-226)||(17751224-17751290)
chr4 (152-226)||(44863056-44863130)
chr4 (88-133)||(8468942-8468987)
chr4 (153-226)||(49004065-49004138)
chr4 (156-224)||(21731751-21731819)
chr4 (79-123)||(27623642-27623686)
chr4 (88-192)||(56480284-56480387)
[»] chr1 (15 HSPs)
chr1 (148-224)||(10744212-10744288)
chr1 (109-233)||(48064204-48064327)
chr1 (88-190)||(49888705-49888806)
chr1 (145-233)||(46252769-46252857)
chr1 (86-233)||(37841893-37842039)
chr1 (110-233)||(38578423-38578544)
chr1 (147-215)||(8852773-8852841)
chr1 (178-226)||(38247345-38247393)
chr1 (178-223)||(14331684-14331729)
chr1 (145-233)||(4549761-4549849)
chr1 (141-221)||(9507083-9507163)
chr1 (88-123)||(37241853-37241888)
chr1 (146-223)||(5894251-5894328)
chr1 (149-202)||(23544731-23544784)
chr1 (91-187)||(42556665-42556760)
[»] chr8 (18 HSPs)
chr8 (141-224)||(26215400-26215483)
chr8 (145-219)||(3936758-3936832)
chr8 (145-226)||(37444502-37444583)
chr8 (145-206)||(41475147-41475208)
chr8 (178-226)||(14956425-14956473)
chr8 (143-226)||(34236064-34236148)
chr8 (90-189)||(4558737-4558835)
chr8 (109-226)||(900749-900864)
chr8 (91-165)||(2699269-2699342)
chr8 (155-221)||(8216787-8216853)
chr8 (147-221)||(16210975-16211049)
chr8 (98-176)||(27728062-27728139)
chr8 (142-220)||(35453707-35453784)
chr8 (171-225)||(40859831-40859885)
chr8 (145-202)||(8407336-8407393)
chr8 (141-186)||(31315536-31315581)
chr8 (88-165)||(31862456-31862532)
chr8 (177-226)||(40637422-40637471)
[»] chr3 (14 HSPs)
chr3 (91-226)||(40665331-40665465)
chr3 (146-231)||(30574002-30574085)
chr3 (146-233)||(49465751-49465838)
chr3 (149-222)||(9279417-9279489)
chr3 (88-193)||(44061054-44061158)
chr3 (91-175)||(1816536-1816619)
chr3 (177-229)||(12833883-12833935)
chr3 (79-226)||(35127393-35127539)
chr3 (79-133)||(2100177-2100231)
chr3 (19-49)||(20873211-20873241)
chr3 (145-189)||(2128338-2128382)
chr3 (147-199)||(23808140-23808192)
chr3 (178-226)||(29520608-29520656)
chr3 (178-226)||(31365402-31365450)
[»] chr2 (19 HSPs)
chr2 (145-224)||(39567807-39567886)
chr2 (110-207)||(4026738-4026834)
chr2 (79-123)||(32757484-32757528)
chr2 (178-226)||(41407193-41407241)
chr2 (88-222)||(42457854-42457987)
chr2 (104-189)||(5998753-5998833)
chr2 (88-165)||(36863656-36863732)
chr2 (90-190)||(5133710-5133809)
chr2 (79-190)||(10143110-10143220)
chr2 (143-190)||(18962123-18962170)
chr2 (92-190)||(3102631-3102728)
chr2 (151-233)||(9833050-9833132)
chr2 (104-162)||(34101983-34102041)
chr2 (177-226)||(5599179-5599228)
chr2 (145-190)||(36114357-36114402)
chr2 (149-189)||(5045248-5045288)
chr2 (170-226)||(19608737-19608793)
chr2 (89-165)||(37292379-37292454)
chr2 (149-189)||(40672887-40672927)
[»] chr6 (10 HSPs)
chr6 (145-219)||(32206107-32206181)
chr6 (109-182)||(29296345-29296417)
chr6 (79-123)||(13907422-13907466)
chr6 (178-226)||(18076088-18076136)
chr6 (91-182)||(1402942-1403032)
chr6 (145-228)||(4163075-4163158)
chr6 (145-228)||(4224696-4224779)
chr6 (145-231)||(264268-264354)
chr6 (109-190)||(2514640-2514720)
chr6 (178-226)||(34430608-34430656)
[»] chr5 (16 HSPs)
chr5 (148-226)||(28776877-28776955)
chr5 (145-226)||(465856-465937)
chr5 (145-226)||(42582814-42582895)
chr5 (88-233)||(6593195-6593338)
chr5 (159-233)||(42573880-42573954)
chr5 (173-226)||(39105366-39105419)
chr5 (173-233)||(1618987-1619047)
chr5 (173-233)||(10771993-10772053)
chr5 (178-224)||(7319141-7319187)
chr5 (145-214)||(11835191-11835260)
chr5 (88-161)||(24030432-24030505)
chr5 (145-226)||(40864624-40864705)
chr5 (79-188)||(42646855-42646963)
chr5 (145-225)||(1465106-1465186)
chr5 (88-160)||(2568625-2568697)
chr5 (145-233)||(5963369-5963457)
[»] chr7 (12 HSPs)
chr7 (143-233)||(7612354-7612445)
chr7 (149-223)||(42656420-42656494)
chr7 (178-226)||(21568758-21568806)
chr7 (83-133)||(18350733-18350783)
chr7 (180-226)||(47795859-47795905)
chr7 (117-189)||(28613594-28613665)
chr7 (88-190)||(5628597-5628698)
chr7 (149-190)||(29574692-29574733)
chr7 (109-226)||(44777034-44777150)
chr7 (150-190)||(7513572-7513612)
chr7 (178-226)||(45806607-45806655)
chr7 (152-232)||(47510007-47510087)
[»] scaffold0024 (1 HSPs)
scaffold0024 (145-201)||(21365-21421)
[»] scaffold0590 (1 HSPs)
scaffold0590 (141-190)||(1157-1206)
[»] scaffold0275 (1 HSPs)
scaffold0275 (141-190)||(2769-2818)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2733447 - 2733215
Alignment:
Q  1 ttttaatgagcttaataagtttttgataagctaattcaagtaacttataatttaatttgtggaaagagtcaaagagcgtatgacatgttcataagctctc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2733447 ttttaatgagcttaatcagtttttgataagctaattcaagtaacttataatttaatttgtggaaagagtcaaagagcttatgacatgttcataagctctc 2733348  T
Q  101 tatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2733347 tatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcat 2733248  T
Q  201 gacaagcgcttatgctataagctgcatattaag 233  Q
    |||||| ||||||||||||||||||||||||||    
T  2733247 gacaagtgcttatgctataagctgcatattaag 2733215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 17884107 - 17883973
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 187  Q
    ||||||||||||| |  ||| ||||||||||||||| ||||||||| ||||| | | ||||||||||||||||||||| | ||| |||| ||||| ||||    
T  17884107 ttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaa-acaatttaactttattttatcttttgttatagaaatagcttacacat 17884009  T
Q  188 aagtgcatatcatgacaagcgcttatgctataagct 223  Q
     ||  | || ||||| |||  |||||||||||||||    
T  17884008 gagcacttaccatgataagtccttatgctataagct 17883973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 3155586 - 3155505
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||||||||||   ||| |||| |||||||||||  ||| |||||||| |||||||| | ||||||||||||    
T  3155586 tttaactttattttatcttttgctatagaaatagcttatacatacatgcttatcatgataagcgcttgtactataagctgca 3155505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 30066881 - 30066940
Alignment:
Q  173 aaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaa 232  Q
    |||| ||||||||| |||||| |||||| | ||||||||||||||||||||||| |||||    
T  30066881 aaatagcttatacacaagtgcttatcattataagcgcttatgctataagctgcaaattaa 30066940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 2987171 - 2987085
Alignment:
Q  146 ttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaa 232  Q
    ||||||||||||||| |||| |  || |||| ||||||| |||||||| |||||||| || | |||||| ||||||||||| |||||    
T  2987171 ttaactttattttattttttgttgtagaaatagcttataaataagtgcttatcatgataaacacttatgttataagctgcaaattaa 2987085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 6364128 - 6364063
Alignment:
Q  149 actttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatg 214  Q
    ||||||||||||||||| | ||| |||| |||||||||||||||| |||| ||| |||| ||||||    
T  6364128 actttattttatcttttgttatagaaatagcttatacataagtgcttatcttgataagcacttatg 6364063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 8422928 - 8422969
Alignment:
Q  149 actttattttatcttttttcataaaaattgcttatacataag 190  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  8422928 actttattttatctttttttataaaaatagcttatacataag 8422969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 28581945 - 28582017
Alignment:
Q  92 taagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatctttt 165  Q
    |||||||||||||||| ||| ||||||||||| ||||| ||| |  || ||||||| |||||||||||||||||    
T  28581945 taagctctctatgatagcttttgaaaacaactcataacatat-ctgaaaatagtttgactttattttatctttt 28582017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 26520316 - 26520404
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    ||||||||||||| ||||||| | ||| |||  | |||||||||||||| |||||||| || | ||||||||| |||| ||| ||||||    
T  26520316 tttaactttatttcatcttttgttatagaaacagtttatacataagtgcttatcatgataaacacttatgctagaagcagcaaattaag 26520404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 52326196 - 52326240
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataa 189  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||||    
T  52326196 tttaactttattttatcttttatcattaaaatagcttatacataa 52326240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 17751224 - 17751290
Alignment:
Q  160 tcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||| | ||| |||| ||||||| ||||| || |||||| ||||| |||||||||||||||||||    
T  17751224 tcttttattatagaaatagcttataaataagcgcttatcattacaagtgcttatgctataagctgca 17751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 44863056 - 44863130
Alignment:
Q  152 ttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||| ||| ||||||  |||||||| |||||| ||||||  | |||||||||||| |||| ||||||||||||||    
T  44863056 ttatcttacctttttctataaaaatagcttatgcataagcacttatcatgacaagtgcttgtgctataagctgca 44863130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 8468987 - 8468942
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttat 133  Q
    |||||||||||||||  ||| ||||||||||||||||||| |||||    
T  8468987 ttcataagctctctagaataacttatgaaaacaactaatagcttat 8468942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 49004065 - 49004138
Alignment:
Q  153 tattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||   ||| |||||||||||||||||| || |||||| | |||||| | |||||||| |||||    
T  49004065 tattttatcttttgctatagaaattgcttatacataagcgcttatcattataagcgcatgtgctataatctgca 49004138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 21731751 - 21731819
Alignment:
Q  156 tttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctg 224  Q
    ||||||||||   |||||||| |||||||| ||||  | |||||||| |||||||| ||||||||||||    
T  21731751 tttatcttttgctataaaaatagcttatacgtaagcacttatcatgataagcgcttgtgctataagctg 21731819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 27623686 - 27623642
Alignment:
Q  79 tatgacatgttcataagctctctatgatatcttatgaaaacaact 123  Q
    ||||||||| |||||||||||| | |||| |||||||||||||||    
T  27623686 tatgacatgctcataagctctccaggataacttatgaaaacaact 27623642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 56480387 - 56480284
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 187  Q
    ||||||||||||| | ||||  ||||||||||| || ||||||||| || || | | |||||||||||||| |||||| | ||  |||| |||||||| |    
T  56480387 ttcataagctctccaagatagtttatgaaaacagcttataacttatacataa-acaatttaactttattttgtcttttgttatggaaatagcttatacgt 56480289  T
Q  188 aagtg 192  Q
    |||||    
T  56480288 aagtg 56480284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 10744288 - 10744212
Alignment:
Q  148 aactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctg 224  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||  | | |||||| |||||||||||||||||||||    
T  10744288 aactttattttatcttttttcatcaaaatagcttatacattagcacttgtcatgataagcgcttatgctataagctg 10744212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 48064327 - 48064204
Alignment:
Q  109 cttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcg 208  Q
    ||||||||| ||||| ||||||||| ||||| ||||||| |||||||||||||||||   ||| |||||| || ||||| ||  |  ||||||| ||| |    
T  48064327 cttatgaaatcaacttataacttatacaaaa-atagttttactttattttatcttttgctatagaaattgtttctacattaggactaatcatgataaggg 48064229  T
Q  209 cttatgctataagctgcatattaag 233  Q
    |||||||||||||||||| ||||||    
T  48064228 cttatgctataagctgcaaattaag 48064204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 49888806 - 49888705
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 187  Q
    |||||||| |||||| |||| ||||||||||||||||||| ||||| | ||| | | || ||||||||||||||||||| || | |||| ||||||||||    
T  49888806 ttcataagttctctaagatagcttatgaaaacaactaatagcttatacgaaa-acaattaaactttattttatctttttccaaagaaatagcttatacat 49888708  T
Q  188 aag 190  Q
    |||    
T  49888707 aag 49888705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 46252769 - 46252857
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    ||||||||||||||||||||| | |||||||| || ||||||| ||||||||||||||  | | ||||| |||||||||| | ||||||    
T  46252769 tttaactttattttatcttttgttataaaaatagcctatacattagtgcatatcatgattaacacttatactataagctgaaaattaag 46252857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 37842039 - 37841893
Alignment:
Q  86 tgttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatac 185  Q
    |||||||||||| || |||||| ||||||  ||||||  ||| ||||| | ||| | | ||||||||||||||||| ||| | |||  ||| ||||||||    
T  37842039 tgttcataagctgtccatgatagcttatgcgaacaacatatagcttatacgaaa-acaatttaactttattttatcatttgttataggaatagcttatac 37841941  T
Q  186 ataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    || ||| | |||||||| ||| ||||||||||| ||||||| ||||||    
T  37841940 atgagtacttatcatgataagtgcttatgctattagctgcaaattaag 37841893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 38578544 - 38578423
Alignment:
Q  110 ttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgca-tatcatgacaagcg 208  Q
    ||||| |||||||| ||| ||||| ||||| ||| ||||||||||| ||||||||| | ||| |||| ||||||||  ||||  | |||||||| |||||    
T  38578544 ttatgtaaacaacttatagcttatacaaaa-ataatttaactttatgttatcttttgttatagaaatagcttatac--aagtttattatcatgataagcg 38578448  T
Q  209 cttatgctataagctgcatattaag 233  Q
    |||||||||||||||| | ||||||    
T  38578447 cttatgctataagctgtaaattaag 38578423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 8852841 - 8852773
Alignment:
Q  147 taactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgc 215  Q
    ||||||||||||||||||| |  ||||||| |||||||||| ||||  |||||||| ||||||||||||    
T  8852841 taactttattttatcttttgttgtaaaaatagcttatacattagtgtttatcatgataagcgcttatgc 8852773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 38247393 - 38247345
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  38247393 gcttatacataagtgcatatcatgataagtgcttgtgctataagctgca 38247345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 14331729 - 14331684
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagct 223  Q
    |||||||||||||||| |||||||| |||||||| |||||||||||    
T  14331729 gcttatacataagtgcttatcatgagaagcgcttgtgctataagct 14331684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 4549849 - 4549761
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    ||||||||||||||||||||| | ||| |||| |||| ||||||||    |||| ||  ||||| ||||||||||||||||| ||||||    
T  4549849 tttaactttattttatcttttgttatagaaatagcttgtacataagcatttatcgtgctaagcgtttatgctataagctgcaaattaag 4549761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 9507083 - 9507163
Alignment:
Q  141 atagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataag 221  Q
    |||||||||| |||||||| ||||| | ||| |||| |||||||||| ||||  ||| |||| |||| |||||||||||||    
T  9507083 atagtttaacattattttaacttttgttatagaaatagcttatacatgagtgtttattatgataagcacttatgctataag 9507163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 37241853 - 37241888
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaact 123  Q
    ||||||||||||||| ||||||||||||||||||||    
T  37241853 ttcataagctctctaggatatcttatgaaaacaact 37241888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 5894251 - 5894328
Alignment:
Q  146 ttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagct 223  Q
    |||||||||||||||||     |||| |||| ||||||||||||| || |||||||| |||| ||| |||||||||||    
T  5894251 ttaactttattttatctgccaccatagaaatagcttatacataagcgcttatcatgataagcacttgtgctataagct 5894328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 23544731 - 23544784
Alignment:
Q  149 actttattttatcttttttcataaaaattgcttatacataagtgcatatcatga 202  Q
    |||| ||||||||||||| |||| |||| ||||||||||||| || ||||||||    
T  23544731 acttaattttatctttttccatagaaatagcttatacataagcgcttatcatga 23544784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 42556665 - 42556760
Alignment:
Q  91 ataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 187  Q
    |||| ||||| |||||| ||||||||||||||| ||| |||||  ||||  |||||| | ||||||| ||||||| ||||| ||||  |||||||||    
T  42556665 ataaactctccatgatagcttatgaaaacaacttatagcttatataaaa-gtagtttgattttatttcatcttttgtcatagaaataacttatacat 42556760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 26215483 - 26215400
Alignment:
Q  141 atagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctg 224  Q
    ||||||||||||||||||||||||| | ||| |||| ||||||||||||| || |||||| | |||||||  ||||||||||||    
T  26215483 atagtttaactttattttatcttttgttatagaaatagcttatacataagcgcttatcattataagcgctcgtgctataagctg 26215400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 3936832 - 3936758
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctata 219  Q
    |||| |||||||||||| ||| | ||| |||| | |||||||||||||| |||||||| ||||||||||| ||||    
T  3936832 tttagctttattttatcctttgttatagaaatagattatacataagtgcctatcatgataagcgcttatgatata 3936758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 37444502 - 37444583
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||| |||||||||| | |||  ||| ||||||||||||| || |||||||| ||| ||||||||| ||| |||||    
T  37444502 tttaactttactttatcttttgttatagtaatagcttatacataagcgcttatcatgataagtgcttatgctttaacctgca 37444583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 41475147 - 41475208
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaag 206  Q
    ||||||| |||||||||||||   |||||| | |||||||||||||||| ||||||||||||    
T  41475147 tttaactgtattttatcttttgctataaaattagcttatacataagtgcttatcatgacaag 41475208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 14956425 - 14956473
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||||| |||||||| ||||| || ||||||||||||||    
T  14956425 gcttatacataagtgcttatcatgataagcgattgtgctataagctgca 14956473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 34236148 - 34236064
Alignment:
Q  143 agtttaactttattttatcttttt-tcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||||||||||||| |  || ||||||||||| |||||| || |||||||| || || || || |||||||||||    
T  34236148 agtttaactttattttatctttttgttgtagaaattgcttatccataagggcttatcatgataaccgtttgtgttataagctgca 34236064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 4558835 - 4558737
Alignment:
Q  90 cataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataa 189  Q
    ||||||||||||| |||| |||||| ||||| || ||| | |||   ||| ||| ||||||||||||||||||||| | ||| |||| ||||||||||||    
T  4558835 cataagctctctaggatagcttatggaaacagcttatagcatatatgaaa-ataatttaactttattttatcttttattatagaaatagcttatacataa 4558737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 900749 - 900864
Alignment:
Q  109 cttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcg 208  Q
    ||||||||||||||| ||| ||||| ||||| |||  |||||||||||||||||||    | | ||||  ||| ||||||||||  |||||||| |||||    
T  900749 cttatgaaaacaacttatagcttatacaaaaaata--ttaactttattttatctttcactacacaaatgacttttacataagtgtttatcatgataagcg 900846  T
Q  209 cttatgctataagctgca 226  Q
     || ||||||||| ||||    
T  900847 tttgtgctataagatgca 900864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 2699342 - 2699269
Alignment:
Q  91 ataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatctttt 165  Q
    ||||||||||||||| | ||||| |||||  ||||||||||||   ||| |||||||||||||||||||| ||||    
T  2699342 ataagctctctatgacaacttataaaaacggctaataacttatatgaaa-atagtttaactttattttatatttt 2699269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 8216853 - 8216787
Alignment:
Q  155 ttttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataag 221  Q
    ||||||||||| | ||| |||| |||||||||||||||  |||||||| ||| | ||||||||||||    
T  8216853 ttttatcttttgttatataaatggcttatacataagtgtttatcatgataagtgtttatgctataag 8216787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 16210975 - 16211049
Alignment:
Q  147 taactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataag 221  Q
    ||||||||||||||| |||   ||| |||| |||||||||| ||||| |||||||| ||| |||| |||||||||    
T  16210975 taactttattttatcatttactatagaaatagcttatacatgagtgcgtatcatgataagtgcttgtgctataag 16211049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 27728062 - 27728139
Alignment:
Q  98 ctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaat 176  Q
    ||||| |||| |||||||||||||||||||  ||||   ||| ||||||| ||||||||||||||||||| ||| ||||    
T  27728062 ctctaggatagcttatgaaaacaactaatactttatatgaaa-atagtttgactttattttatctttttttatagaaat 27728139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 35453707 - 35453784
Alignment:
Q  142 tagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataa 220  Q
    |||||||||||||||||||||||| |  || |||  | ||||| |||||| | ||| ||||||||||||||||||||||    
T  35453707 tagtttaactttattttatcttttgttgtagaaacagattatatataagtacttat-atgacaagcgcttatgctataa 35453784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 40859831 - 40859885
Alignment:
Q  171 aaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgc 225  Q
    |||||| ||||||||||||| || |||||||| |||| ||| |||||||||||||    
T  40859831 aaaaatagcttatacataagcgcttatcatgataagcacttgtgctataagctgc 40859885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 8407393 - 8407336
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatga 202  Q
    |||||||||||||||||||||  |||| ||||  ||||||| |||| |||||||||||    
T  8407393 tttaactttattttatcttttggcatagaaatgacttatacgtaagcgcatatcatga 8407336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 31315536 - 31315581
Alignment:
Q  141 atagtttaactttattttatcttttttcataaaaattgcttataca 186  Q
    ||||||| ||||||||||||||||| | |||||||| |||||||||    
T  31315536 atagtttgactttattttatcttttattataaaaatagcttataca 31315581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 31862532 - 31862456
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatctttt 165  Q
    ||||||||||||||| |||| |||||||||||| || ||| ||||| | | | ||||||| ||||||| |||||||||    
T  31862532 ttcataagctctctaggataacttatgaaaacatcttatagcttatacgaga-atagtttgactttatattatctttt 31862456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 40637422 - 40637471
Alignment:
Q  177 tgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||| |||||||| ||| |||| |||| ||||||||||||||||||    
T  40637422 tgcttataaataagtgcttattatgataagcacttatgctataagctgca 40637471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 40665465 - 40665331
Alignment:
Q  91 ataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataag 190  Q
    |||||||||| | |||| |||||||||||| || ||||||||  ||||| ||| ||| | |||| |||||||| | | |||||||| |||| |||| |||    
T  40665465 ataagctctccaagataacttatgaaaacatcttataacttacacaaaa-ataattttattttagtttatcttctattataaaaatagcttgtacagaag 40665367  T
Q  191 tgcatatcatgacaagcgcttatgctataagctgca 226  Q
    ||| |||||||| |||  ||||||||||||||||||    
T  40665366 tgcttatcatgataagaacttatgctataagctgca 40665331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 30574002 - 30574085
Alignment:
Q  146 ttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatatta 231  Q
    |||||||||||||||||||||  ||| |||| ||||||||||||| || |||||||| ||  ||||||| ||||||||||| ||||    
T  30574002 ttaactttattttatcttttt--atagaaatagcttatacataagcgcttatcatgataaatgcttatgatataagctgcaaatta 30574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 49465751 - 49465838
Alignment:
Q  146 ttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    |||||||||||||||||||| | |||||||| ||||| ||||||| |  | |||||| ||| | ||||||||||| ||||| ||||||    
T  49465751 ttaactttattttatcttttgttataaaaatagcttacacataagcgtttctcatgataagtgattatgctataaactgcaaattaag 49465838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 9279417 - 9279489
Alignment:
Q  149 actttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagc 222  Q
    |||||||| |||||||||||  ||||||  ||||||||||| ||| ||| |||| |||||||||||||||||||    
T  9279417 actttattgtatcttttttcgaaaaaataacttatacataaatgcttat-atgataagcgcttatgctataagc 9279489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 44061054 - 44061158
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 187  Q
    |||||||| |||||| |||||| ||||||||||||| ||| |||||  |||| | | |||||| ||||||||||||||   ||| |||| |||||||||     
T  44061054 ttcataagttctctaagatatcatatgaaaacaacttatagcttatagaaaa-acaatttaaccttattttatcttttgctatagaaatagcttatacag 44061152  T
Q  188 aagtgc 193  Q
    ||||||    
T  44061153 aagtgc 44061158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 1816619 - 1816536
Alignment:
Q  91 ataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaa 175  Q
    |||||||||| |  ||| ||||||||||||||| ||| ||||| ||||| | ||||| ||||||||||||||||| | |||||||    
T  1816619 ataagctctccagtatagcttatgaaaacaacttatatcttatacaaaa-acagtttgactttattttatcttttattataaaaa 1816536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 12833935 - 12833883
Alignment:
Q  177 tgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatat 229  Q
    |||||||| |||||||| ||| |||| |||| |||||||||||||||||||||    
T  12833935 tgcttataaataagtgcttattatgataagcacttatgctataagctgcatat 12833883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 35127393 - 35127539
Alignment:
Q  79 tatgacatgttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattg 178  Q
    ||||||||||| |||||||||| | ||||   |||||||| |  | ||| | ||||||||| | | |||||||||| | |||||||| | ||| |||| |    
T  35127393 tatgacatgtttataagctctccaagatagtgtatgaaaatagtttatagcatatgcaaaa-acaatttaactttagtatatcttttgttatagaaatag 35127491  T
Q  179 cttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    | ||||||||||  | |||||||| ||| ||||||| |||||||||||    
T  35127492 cctatacataagcacttatcatgataagagcttatggtataagctgca 35127539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 2100177 - 2100231
Alignment:
Q  79 tatgacatgttcataagctctctatgatatcttatgaaaacaactaataacttat 133  Q
    |||||||||||| ||||||||| | |||| ||||||||||||||| ||| |||||    
T  2100177 tatgacatgttcctaagctctccaagataacttatgaaaacaacttatagcttat 2100231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 20873241 - 20873211
Alignment:
Q  19 gtttttgataagctaattcaagtaacttata 49  Q
    |||||||||||||||||||||||||||||||    
T  20873241 gtttttgataagctaattcaagtaacttata 20873211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 2128338 - 2128382
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataa 189  Q
    ||||||||||||||||||||| | ||| |||| ||||||||||||    
T  2128338 tttaactttattttatcttttgttatagaaatagcttatacataa 2128382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 23808140 - 23808192
Alignment:
Q  147 taactttattttatcttttttcataaaaattgcttatacataagtgcatatca 199  Q
    ||||||||||||| || || | |||||||| |||||||||||||||| |||||    
T  23808140 taactttattttacctattgttataaaaatagcttatacataagtgcctatca 23808192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 29520608 - 29520656
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||||| ||| |||| ||| | |||||||||||||||||    
T  29520608 gcttatacataagtgcttattatgataagtgtttatgctataagctgca 29520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 31365402 - 31365450
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||||| |||||||| || | ||| ||||||||||||||    
T  31365402 gcttatacataagtgcttatcatgataatcacttgtgctataagctgca 31365450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 39567886 - 39567807
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctg 224  Q
    ||||||||||||||||||||| | ||| ||||  |||||||| |||||| |||||||| |||||||||||| ||||||||    
T  39567886 tttaactttattttatcttttgttatagaaatatcttatacacaagtgcttatcatgataagcgcttatgcaataagctg 39567807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 4026834 - 4026738
Alignment:
Q  110 ttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagc 207  Q
    ||||||||||| || |||| |||||||||| ||| |||||||||||||||||||||   |||||||| ||||||| |||||  | |||||||| ||||    
T  4026834 ttatgaaaacagcttataatttatgcaaaa-ataatttaactttattttatcttttgctataaaaatagcttatagataagcacttatcatgataagc 4026738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 32757484 - 32757528
Alignment:
Q  79 tatgacatgttcataagctctctatgatatcttatgaaaacaact 123  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||    
T  32757484 tatgacatgtccataagctctccatgatatcttatgaaaacaact 32757528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 41407241 - 41407193
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||||||    
T  41407241 gcttatacataagtgcttatcatgataagcgcttgtgctataagctgca 41407193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 42457987 - 42457854
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 187  Q
    |||||| | |||||| |||| |||||||| ||| |||| | ||||  ||||| | | |||||||||||||||||||||   ||| |||| | ||||||||    
T  42457987 ttcatatgttctctaagatagcttatgaatacagctaagagcttaaacaaaa-acaatttaactttattttatcttttactatagaaatagattatacat 42457889  T
Q  188 aagtgcatatcatgacaagcgcttatgctataagc 222  Q
    || ||| |||||||| | |||||| ||||||||||    
T  42457888 aaatgcttatcatgataggcgcttgtgctataagc 42457854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 5998753 - 5998833
Alignment:
Q  104 gatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataa 189  Q
    |||| ||| ||||||||||| |||||||||| ||     ||||||||||||||||||||||| | |||||||| ||||||| ||||    
T  5998753 gatagcttgtgaaaacaacttataacttatgaaa-----agtttaactttattttatcttttgttataaaaatagcttatatataa 5998833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 36863656 - 36863732
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatctttt 165  Q
    ||||||||||||| | |||| ||||||||||||| | |||||||||  |||| || |||| |||||||||||||||||    
T  36863656 ttcataagctctccaagatagcttatgaaaacaatttataacttatataaaa-attgtttgactttattttatctttt 36863732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 5133809 - 5133710
Alignment:
Q  90 cataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataa 189  Q
    ||||||||||||  |||| ||| |||||||| || ||| |||||  |||| | |||||| |||||||||||||||| | ||| |||| ||||||||||||    
T  5133809 cataagctctcttagataacttttgaaaacagcttatatcttatataaaa-acagtttatctttattttatcttttgttatagaaatagcttatacataa 5133711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 10143220 - 10143110
Alignment:
Q  79 tatgacatgttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattg 178  Q
    |||||||| | ||||| ||||| |||||| |||||||||| |||| ||| |||||  |||| | ||||| |||| |||||||||||| | ||| ||||      
T  10143220 tatgacatatccataaactctccatgatagcttatgaaaaaaacttatagcttatataaaa-acagtttgacttaattttatcttttgttatagaaataa 10143122  T
Q  179 cttatacataag 190  Q
    ||||||||||||    
T  10143121 cttatacataag 10143110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 18962123 - 18962170
Alignment:
Q  143 agtttaactttattttatcttttttcataaaaattgcttatacataag 190  Q
    ||||||||||||||||||||||| | |||||||| ||| |||||||||    
T  18962123 agtttaactttattttatcttttgttataaaaatagctaatacataag 18962170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 3102728 - 3102631
Alignment:
Q  92 taagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataag 190  Q
    |||| |||| ||||||  ||||||||||| ||||||  ||||  |||| ||||||| |||||||||||| ||||   |||||||| |||||||||||||    
T  3102728 taagttctccatgataaattatgaaaacagctaatagattatataaaa-atagtttgactttattttatattttgctataaaaatagcttatacataag 3102631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 9833132 - 9833050
Alignment:
Q  151 tttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    ||||||||||||||| | ||  |||| | |||||||||||||  |||||||| ||  ||||||||||||||||| | ||||||    
T  9833132 tttattttatcttttgttatggaaatagattatacataagtgtttatcatgataaatgcttatgctataagctgtaaattaag 9833050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 34102041 - 34101983
Alignment:
Q  104 gatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatct 162  Q
    |||| ||||| ||||||||||||||||||| ||||| |  |||| ||||||||||||||    
T  34102041 gatagcttataaaaacaactaataacttatacaaaaaaacgtttgactttattttatct 34101983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 5599179 - 5599228
Alignment:
Q  177 tgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||| |||||||| ||| |||| |||| ||||||||||||||||||    
T  5599179 tgcttataaataagtgcttattatgataagcacttatgctataagctgca 5599228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 36114402 - 36114357
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataag 190  Q
    ||||||||||||||||||||| |||||||||| ||| ||| |||||    
T  36114402 tttaactttattttatcttttgtcataaaaatagctaatatataag 36114357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 5045248 - 5045288
Alignment:
Q  149 actttattttatcttttttcataaaaattgcttatacataa 189  Q
    ||||||||||||||||| | |||||||| ||||||||||||    
T  5045248 actttattttatcttttgttataaaaatagcttatacataa 5045288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 19608737 - 19608793
Alignment:
Q  170 taaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    ||||||| |||||||||||||||| |||||||  | | |||| ||||||||||||||    
T  19608737 taaaaatagcttatacataagtgcttatcatggtatgtgcttgtgctataagctgca 19608793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 37292379 - 37292454
Alignment:
Q  89 tcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatctttt 165  Q
    |||||| ||||| | |||| |||| |||||||||||||| |||||   ||| ||||||| |||||||||||||||||    
T  37292379 tcataaactctccaggatagcttaagaaaacaactaatagcttatatgaaa-atagttttactttattttatctttt 37292454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 40672887 - 40672927
Alignment:
Q  149 actttattttatcttttttcataaaaattgcttatacataa 189  Q
    ||||||||||||||||||||||| ||||  |||||||||||    
T  40672887 actttattttatcttttttcatagaaataacttatacataa 40672927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 32206107 - 32206181
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctata 219  Q
    ||||||||||||| ||||||| ||||| | || ||||| |||||||||| |||||||| ||||||||||||||||    
T  32206107 tttaactttatttcatcttttgtcatagagatagcttacacataagtgcttatcatgataagcgcttatgctata 32206181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 29296345 - 29296417
Alignment:
Q  109 cttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgctta 182  Q
    |||| |||||||||| ||| ||||| ||||| ||| ||||||||||||||||||||||||||| |||| |||||    
T  29296345 cttaagaaaacaacttataccttatacaaaa-ataatttaactttattttatcttttttcatagaaatcgctta 29296417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 13907466 - 13907422
Alignment:
Q  79 tatgacatgttcataagctctctatgatatcttatgaaaacaact 123  Q
    ||||||||||||||||||||| || |||| |||||||||||||||    
T  13907466 tatgacatgttcataagctctttaggatagcttatgaaaacaact 13907422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 18076136 - 18076088
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||||| ||| |||| |||||||| ||||||||||||||    
T  18076136 gcttatacataagtgcttattatgataagcgcttgtgctataagctgca 18076088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 1403032 - 1402942
Alignment:
Q  91 ataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgctta 182  Q
    ||||| |||| |||||| ||||||||||||| | ||| |||||   ||| ||||||||||||||||||||||||| | ||| |||| |||||    
T  1403032 ataagatctccatgatagcttatgaaaacaatttatagcttatatgaaa-atagtttaactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 4163158 - 4163075
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcata 228  Q
    |||||||||||||||||| |||  |||||||| ||||||   ||||||  |||||||| ||| || | ||||||||||||||||    
T  4163158 tttaactttattttatctatttctataaaaatagcttatgtgtaagtgtttatcatgataagtgcctgtgctataagctgcata 4163075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 4224779 - 4224696
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcata 228  Q
    |||||||||||||||||| |||  |||||||| ||||||   ||||||  |||||||| ||| || | ||||||||||||||||    
T  4224779 tttaactttattttatctatttctataaaaatagcttatgtgtaagtgtttatcatgataagtgcctgtgctataagctgcata 4224696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 264354 - 264268
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatatta 231  Q
    |||||||||||||||||||||    || |||| ||||||| |||||  | |||||||| |||| ||| |||||||||||||| ||||    
T  264354 tttaactttattttatcttttgctttagaaatagcttatatataagcacttatcatgataagcacttgtgctataagctgcaaatta 264268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 2514720 - 2514640
Alignment:
Q  109 cttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataag 190  Q
    |||||||||| |||| ||| || ||  ||||| |||||| ||||||||||||||||| | ||| |||| |||||||||||||    
T  2514720 cttatgaaaataacttatagctcatataaaat-tagtttgactttattttatcttttattatagaaatagcttatacataag 2514640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 34430656 - 34430608
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    ||||||||||||| || |||||||| |||| ||| ||||||||||||||    
T  34430656 gcttatacataagcgcctatcatgataagcacttgtgctataagctgca 34430608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 28776955 - 28776877
Alignment:
Q  148 aactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||||||||  |||||||| |||||||||||||  | |||||||| ||| ||||| |||||||||||||    
T  28776955 aactttattttatctttttcaataaaaatagcttatacataagcacttatcatgataagtgcttaggctataagctgca 28776877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 465937 - 465856
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    ||||||||||||||||||||| ||||| |||| ||||||| |||||||| |||||||| | | ||||||| ||||| |||||    
T  465937 tttaactttattttatcttttgtcatagaaatagcttatatataagtgcttatcatgaaatgagcttatgttataaactgca 465856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 42582895 - 42582814
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    ||||||||||||| ||||||| ||||  |||| ||||||||||||| || ||| |||| || ||||||||||||||||||||    
T  42582895 tttaactttatttcatcttttatcatggaaatagcttatacataagcgcttattatgataaacgcttatgctataagctgca 42582814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 6593338 - 6593195
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 187  Q
    ||||||||||||||| | || ||||| |||||| || ||| | ||| || ||||   ||||||||||||||||||||| | ||| |||||| ||||||||    
T  6593338 ttcataagctctctaaggtagcttatcaaaacagcttatagcctatacagaataa--tttaactttattttatcttttgttatagaaattgtttatacat 6593241  T
Q  188 aagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    ||| || ||||| || ||  | ||||||||||||||| | ||||||    
T  6593240 aagcgcgtatcaagataaatgattatgctataagctgtaaattaag 6593195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 42573880 - 42573954
Alignment:
Q  159 atcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    ||||||| | ||| |||| ||||||||||||| || |||||||| ||||||| | ||||||||||||| ||||||    
T  42573880 atcttttgttatagaaatagcttatacataagcgcttatcatgataagcgctcaggctataagctgcaaattaag 42573954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 39105419 - 39105366
Alignment:
Q  173 aaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||| ||||||||||||| || |||||||| |||| ||||||||||||||||||    
T  39105419 aaatagcttatacataagcgcttatcatgataagcacttatgctataagctgca 39105366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 1619047 - 1618987
Alignment:
Q  173 aaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    |||| ||||||||| |||||| |||||| | ||||||||||||||||||| ||| ||||||    
T  1619047 aaatagcttatacaaaagtgcttatcatcaaaagcgcttatgctataagcagcaaattaag 1618987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 10771993 - 10772053
Alignment:
Q  173 aaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    |||| ||||||||||| |||  |||||||| |||| |||||||||||||||||| ||||||    
T  10771993 aaatagcttatacatatgtgtttatcatgataagcacttatgctataagctgcaaattaag 10772053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 7319141 - 7319187
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagctg 224  Q
    |||||| ||||||||| |||||||| |||||||| ||||||||||||    
T  7319141 gcttatgcataagtgcttatcatgataagcgcttgtgctataagctg 7319187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 11835260 - 11835191
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatg 214  Q
    ||||||||||||||||||||| | |||||||| | ||||||||||   | |||||||| ||||| |||||    
T  11835260 tttaactttattttatcttttgttataaaaatggtttatacataaacacttatcatgataagcgtttatg 11835191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 24030432 - 24030505
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatc 161  Q
    |||||||| | ||||  ||| ||||| ||||||||| ||||| ||| ||||| ||| |||||||||||||||||    
T  24030432 ttcataagttatctaatatagcttataaaaacaacttataacatatccaaaaaataatttaactttattttatc 24030505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 40864705 - 40864624
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    ||||||||||||||||||| |   |||||||| || |||| |||||  | | |||| ||| |||||||||||||||||||||    
T  40864705 tttaactttattttatcttatgctataaaaatagcctatatataagcacttttcataacaggcgcttatgctataagctgca 40864624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 42646963 - 42646855
Alignment:
Q  79 tatgacatgttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattg 178  Q
    |||||||||||||||||||||| | |||   ||||||||||| || ||| ||||  ||||| | | |||||||| |||||||| ||| | ||||||||      
T  42646963 tatgacatgttcataagctctccaagatcgtttatgaaaacaccttatagcttaaacaaaa-acaatttaacttaattttatcctttgttataaaaatat 42646865  T
Q  179 cttatacata 188  Q
    ||||||||||    
T  42646864 cttatacata 42646855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 1465106 - 1465186
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgc 225  Q
    ||||||||||||||||| | |   ||| |||| ||||||||||||| || |||| ||| |||| |||||||||||| ||||    
T  1465106 tttaactttattttatcctatgctatagaaatagcttatacataagcgcttatcttgataagcacttatgctataaactgc 1465186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 2568697 - 2568625
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttat 160  Q
    ||||| ||||||| |||||| ||||||||||||||| ||| ||||| | ||| | | ||||||||| ||||||    
T  2568697 ttcattagctctccatgatagcttatgaaaacaacttatagcttatacgaaaaacaatttaactttgttttat 2568625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 5963369 - 5963457
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    ||||||||||||||||||||  | ||| |||| | || |||||||| || |||||||| ||  |||||||||||||  |||| ||||||    
T  5963369 tttaactttattttatctttcattatagaaatagtttgtacataagcgcttatcatgataaatgcttatgctataaattgcaaattaag 5963457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 7612445 - 7612354
Alignment:
Q  143 agtttaactttattttatcttttttca-taaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaag 233  Q
    |||||||||| ||| |||||||||| | | ||||| ||||||||||| | || |||||||| ||| ||||||||||||||||||| ||||||    
T  7612445 agtttaacttaattatatctttttttaattaaaatagcttatacatatgagcttatcatgataagtgcttatgctataagctgcaaattaag 7612354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 42656494 - 42656420
Alignment:
Q  149 actttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagct 223  Q
    ||||||||||||||||| | ||| |||| ||||||| |||||||| |||  ||| ||||||||||||||||||||    
T  42656494 actttattttatcttttgttatagaaatagcttatatataagtgcttattttgataagcgcttatgctataagct 42656420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 21568758 - 21568806
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  21568758 gcttatacataagtgcttatcatgataagcacttatgctataagctgca 21568806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 18350733 - 18350783
Alignment:
Q  83 acatgttcataagctctctatgatatcttatgaaaacaactaataacttat 133  Q
    |||||||||||||||||| |||||| |||||||||||| || |||||||||    
T  18350733 acatgttcataagctctccatgatagcttatgaaaacagcttataacttat 18350783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 47795905 - 47795859
Alignment:
Q  180 ttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||  |||||||| |||||||||||||||||||||||    
T  47795905 ttatacataagtggttatcatgataagcgcttatgctataagctgca 47795859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 28613594 - 28613665
Alignment:
Q  117 aacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataa 189  Q
    ||||||| ||||||||| ||||| | | ||||||||| ||||||||||| | |||||||| ||||||||||||    
T  28613594 aacaacttataacttatacaaaa-acaatttaactttgttttatcttttgttataaaaatagcttatacataa 28613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 5628597 - 5628698
Alignment:
Q  88 ttcataagctctctatgatatcttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacat 187  Q
    |||||||||||||| |||||||||||||||||| || ||| ||||    ||| | |||| |||| ||||||||| ||| | |||||||| |||||| |||    
T  5628597 ttcataagctctctgtgatatcttatgaaaacagcttatatcttaaatgaaa-acagttcaactctattttatcatttgttataaaaatagcttatgcat 5628695  T
Q  188 aag 190  Q
    |||    
T  5628696 aag 5628698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 29574692 - 29574733
Alignment:
Q  149 actttattttatcttttttcataaaaattgcttatacataag 190  Q
    ||||||||| ||||||| |||||||||| |||||||||||||    
T  29574692 actttatttcatcttttgtcataaaaatagcttatacataag 29574733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 44777034 - 44777150
Alignment:
Q  109 cttatgaaaacaactaataacttatgcaaaatatagtttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcg 208  Q
    ||||||||||||||| ||| ||| | | ||| | ||||||  |||| ||||||||||   ||| |||| | |||| ||||||||| |||||||| || |     
T  44777034 cttatgaaaacaacttatagcttgtccgaaa-acagtttatttttaatttatcttttgcaatagaaatagtttatgcataagtgcttatcatgataaaca 44777132  T
Q  209 cttatgctataagctgca 226  Q
    ||||||||||||||||||    
T  44777133 cttatgctataagctgca 44777150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 7513612 - 7513572
Alignment:
Q  150 ctttattttatcttttttcataaaaattgcttatacataag 190  Q
    |||||||||||||||| || ||||||| |||||||||||||    
T  7513612 ctttattttatcttttgtcttaaaaatagcttatacataag 7513572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 45806607 - 45806655
Alignment:
Q  178 gcttatacataagtgcatatcatgacaagcgcttatgctataagctgca 226  Q
    |||||||||||||||| ||| |||| ||| |||| ||||||||||||||    
T  45806607 gcttatacataagtgcttattatgataagtgcttttgctataagctgca 45806655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 47510087 - 47510007
Alignment:
Q  152 ttattttatcttttttcataaaaattgcttatacataagtgcatatcatgacaagcgcttatgctataagctgcatattaa 232  Q
    |||||||||||| | | |||||||||||||||| |||||  | |||||||| |||| |||| || ||||||| || |||||    
T  47510087 ttattttatcttatgttataaaaattgcttatatataagcccttatcatgataagcacttaggcaataagctacaaattaa 47510007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 21365 - 21421
Alignment:
Q  145 tttaactttattttatcttttttcataaaaattgcttatacataagtgcatatcatg 201  Q
    |||||||||||||||||||||   |||||||| |||||||||||||||| |||||||    
T  21365 tttaactttattttatcttttcctataaaaatagcttatacataagtgcttatcatg 21421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 1157 - 1206
Alignment:
Q  141 atagtttaactttattttatcttttttcataaaaattgcttatacataag 190  Q
    ||||||| ||||||||||||||||| | ||| |||| |||||||||||||    
T  1157 atagtttgactttattttatcttttgttatagaaatagcttatacataag 1206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 2818 - 2769
Alignment:
Q  141 atagtttaactttattttatcttttttcataaaaattgcttatacataag 190  Q
    ||||||| ||||||||||||||||| | ||| |||| |||||||||||||    
T  2818 atagtttgactttattttatcttttgttatagaaatagcttatacataag 2769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University