View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1379_high_7 (Length: 582)

Name: NF1379_high_7
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1379_high_7
NF1379_high_7
[»] chr8 (23 HSPs)
chr8 (249-556)||(34576689-34577001)
chr8 (18-243)||(34575800-34576020)
chr8 (18-122)||(34576587-34576688)
chr8 (244-393)||(31313303-31313451)
chr8 (244-392)||(6530302-6530449)
chr8 (244-352)||(39699623-39699731)
chr8 (248-352)||(8867182-8867286)
chr8 (249-392)||(13948947-13949089)
chr8 (296-353)||(17920220-17920277)
chr8 (246-354)||(40505309-40505417)
chr8 (244-353)||(42685706-42685814)
chr8 (266-400)||(8769009-8769141)
chr8 (283-363)||(12703489-12703568)
chr8 (252-391)||(21372447-21372585)
chr8 (266-401)||(35865150-35865284)
chr8 (246-332)||(45244677-45244763)
chr8 (283-352)||(7774631-7774700)
chr8 (283-352)||(7791278-7791347)
chr8 (283-352)||(7811862-7811931)
chr8 (244-313)||(39699873-39699942)
chr8 (278-352)||(36680165-36680237)
chr8 (244-353)||(13933105-13933214)
chr8 (245-333)||(5493362-5493450)
[»] chr2 (26 HSPs)
chr2 (244-392)||(20061073-20061220)
chr2 (266-392)||(14275773-14275898)
chr2 (271-339)||(25626319-25626387)
chr2 (266-392)||(32294528-32294653)
chr2 (266-392)||(39420211-39420336)
chr2 (278-392)||(36284995-36285108)
chr2 (245-353)||(13487759-13487866)
chr2 (244-401)||(25626469-25626625)
chr2 (270-391)||(30549081-30549201)
chr2 (271-352)||(39364445-39364526)
chr2 (245-336)||(2889103-2889194)
chr2 (278-352)||(41890043-41890117)
chr2 (264-352)||(9950285-9950373)
chr2 (245-353)||(44068838-44068946)
chr2 (294-388)||(15079874-15079967)
chr2 (264-353)||(2290276-2290365)
chr2 (308-401)||(36278310-36278402)
chr2 (295-363)||(13349710-13349777)
chr2 (303-391)||(36528402-36528489)
chr2 (280-347)||(15135370-15135437)
chr2 (286-352)||(4828866-4828932)
chr2 (244-339)||(409894-409990)
chr2 (264-344)||(7061540-7061620)
chr2 (282-339)||(7743795-7743852)
chr2 (244-337)||(37230557-37230650)
chr2 (304-352)||(30944257-30944305)
[»] chr7 (12 HSPs)
chr7 (244-401)||(32786786-32786942)
chr7 (266-391)||(28337222-28337346)
chr7 (277-353)||(39837457-39837533)
chr7 (244-339)||(34964030-34964125)
chr7 (295-353)||(47390572-47390630)
chr7 (295-392)||(24331030-24331126)
chr7 (244-392)||(45837804-45837951)
chr7 (278-353)||(25119768-25119843)
chr7 (245-352)||(26081030-26081137)
chr7 (245-352)||(26104817-26104924)
chr7 (303-347)||(31054228-31054272)
chr7 (246-339)||(32546704-32546798)
[»] chr1 (15 HSPs)
chr1 (244-392)||(11017960-11018107)
chr1 (245-353)||(1035565-1035673)
chr1 (272-352)||(31635465-31635545)
chr1 (243-339)||(36012486-36012582)
chr1 (245-392)||(5799757-5799903)
chr1 (245-391)||(37316595-37316738)
chr1 (244-353)||(16394821-16394930)
chr1 (246-338)||(29033009-29033101)
chr1 (266-392)||(25366753-25366878)
chr1 (245-354)||(28490554-28490662)
chr1 (248-345)||(41884683-41884780)
chr1 (245-352)||(16583152-16583259)
chr1 (277-369)||(4084727-4084818)
chr1 (278-352)||(31262588-31262663)
chr1 (247-316)||(950055-950124)
[»] chr4 (23 HSPs)
chr4 (243-392)||(27918354-27918502)
chr4 (294-391)||(34936371-34936467)
chr4 (244-402)||(24940627-24940783)
chr4 (269-338)||(30033589-30033658)
chr4 (247-352)||(45249947-45250052)
chr4 (244-339)||(1961606-1961701)
chr4 (244-352)||(36989829-36989938)
chr4 (244-352)||(564168-564276)
chr4 (245-392)||(54997720-54997867)
chr4 (242-354)||(41459941-41460054)
chr4 (272-352)||(1008953-1009033)
chr4 (244-392)||(28675703-28675850)
chr4 (244-392)||(50297655-50297802)
chr4 (246-352)||(14138973-14139079)
chr4 (246-352)||(20537360-20537466)
chr4 (269-339)||(54719692-54719762)
chr4 (246-339)||(39259995-39260088)
chr4 (244-352)||(42051169-42051277)
chr4 (282-352)||(24743982-24744052)
chr4 (304-401)||(29508720-29508816)
chr4 (246-332)||(26546007-26546094)
chr4 (296-352)||(40311735-40311791)
chr4 (296-352)||(40321811-40321867)
[»] chr3 (21 HSPs)
chr3 (244-352)||(47006592-47006700)
chr3 (245-352)||(48192624-48192731)
chr3 (244-392)||(17587052-17587200)
chr3 (271-401)||(53741288-53741414)
chr3 (272-391)||(37919182-37919299)
chr3 (244-391)||(47069238-47069382)
chr3 (295-352)||(33791526-33791583)
chr3 (244-353)||(47849980-47850089)
chr3 (244-392)||(18029984-18030131)
chr3 (271-358)||(25134138-25134225)
chr3 (278-353)||(44418482-44418557)
chr3 (245-391)||(26040814-26040957)
chr3 (272-352)||(19961158-19961237)
chr3 (282-352)||(39430294-39430364)
chr3 (244-386)||(47499396-47499537)
chr3 (269-334)||(25096303-25096368)
chr3 (278-354)||(42891048-42891123)
chr3 (278-353)||(54787855-54787930)
chr3 (248-353)||(25102037-25102141)
chr3 (278-339)||(28193620-28193681)
chr3 (269-353)||(4539877-4539961)
[»] chr5 (13 HSPs)
chr5 (245-339)||(41144651-41144745)
chr5 (270-351)||(10523677-10523758)
chr5 (271-352)||(43340302-43340383)
chr5 (271-352)||(26105032-26105113)
chr5 (246-401)||(29557470-29557624)
chr5 (244-324)||(40845786-40845866)
chr5 (244-339)||(14547819-14547914)
chr5 (266-392)||(967581-967707)
chr5 (282-392)||(41063883-41063992)
chr5 (270-339)||(554358-554427)
chr5 (244-353)||(12212241-12212350)
chr5 (289-354)||(15190051-15190116)
chr5 (295-352)||(16627316-16627373)
[»] chr6 (9 HSPs)
chr6 (245-353)||(30249141-30249249)
chr6 (244-352)||(3787424-3787532)
chr6 (266-346)||(30438430-30438510)
chr6 (283-344)||(2614366-2614427)
chr6 (295-352)||(5849966-5850023)
chr6 (269-353)||(29285990-29286074)
chr6 (295-352)||(1065635-1065692)
chr6 (244-316)||(14215160-14215232)
chr6 (270-352)||(2831380-2831462)
[»] scaffold0542 (1 HSPs)
scaffold0542 (244-392)||(4511-4657)
[»] scaffold0116 (2 HSPs)
scaffold0116 (271-352)||(3019-3100)
scaffold0116 (271-352)||(6060-6141)
[»] scaffold0181 (1 HSPs)
scaffold0181 (286-390)||(10765-10868)
[»] scaffold0482 (1 HSPs)
scaffold0482 (283-352)||(566-635)
[»] scaffold0127 (1 HSPs)
scaffold0127 (303-352)||(13101-13150)
[»] scaffold0328 (1 HSPs)
scaffold0328 (272-334)||(12431-12493)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 249 - 556
Target Start/End: Original strand, 34576689 - 34577001
Alignment:
Q  249 tgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatg 348  Q
    |||||||||||| ||| |||||||||||||||| |||||||||||||||||| || |||||||||||| |||| |||||||||||| |||||||||||||    
T  34576689 tgttaatttgtgccttcaagggcacatgctaagaaacttattatggaaatatgcggatcaaaagtcgtgcattcaacttcttaaaaattaacatattatg 34576788  T
Q  349 ttttttcaatataaatttgctctctttaggttgcttaacatgtggtcttaggga----gcatgacccttatcttttttatggttgaaagaaaaagacaaa 444  Q
    ||||  |||| |||||||||||| |||||||||||| |||||| ||||||||      |||||||||||||||||||||||||||||||||||||| |||    
T  34576789 ttttcccaatgtaaatttgctctttttaggttgctttacatgtagtcttaggatatacgcatgacccttatcttttttatggttgaaagaaaaagaaaaa 34576888  T
Q  445 a-aagcttgtttttatcttcataattggtgacttagttttttacattgnnnnnnntgatctctacaactctggagtggtgcttatagttagtctcggaaa 543  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||| ||||    
T  34576889 aaaagcttgtttttatcttcataattggtgacttagttttttacattgaaaaaaatgatctctacaactctggagtgatgcttatagttagtctctgaaa 34576988  T
Q  544 atgaagttgttga 556  Q
    |||||||||||||    
T  34576989 atgaagttgttga 34577001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 34575800 - 34576020
Alignment:
Q  18 ctaacagatgttcaaagagcacacatgttattgggaaaatagagaagttttgacattcagtaacatatatatattcattgttcttttcggcaattatata 117  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  34575800 ctaacagatgttctaagagcacacatgttaatgg-aaaatagagaagttttgacattcagtaacatat--atattcattgttcttttcggcaattatata 34575896  T
Q  118 ttcataattaaagatttttaacataataaaaattacatttannnnnnnncaaaaagatatctttcgaaaattacttttatggttttaagcatttctacaa 217  Q
    |||||||||||||||||||||||||||||||||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34575897 ttcataattaaagatttttaacataataaaaattactttt--tttttttcaaaaagatatctttcgaaaattacttttatggttttaagcatttctacaa 34575994  T
Q  218 aaattatcagccaaaaagtgaagtta 243  Q
    ||||||||||||||||||||||||||    
T  34575995 aaattatcagccaaaaagtgaagtta 34576020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 34576587 - 34576688
Alignment:
Q  18 ctaacagatgttcaaagagcacacatgttattgggaaaatagagaagttttgacattcagtaacatatatatattcattgttcttttcggcaattatata 117  Q
    ||||||||||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  34576587 ctaacagatgttctaagagcacacatgttaatcg-aaaatagagaagttttgacattcagtaacatat--atattcattgttcttttcggcaattatata 34576683  T
Q  118 ttcat 122  Q
    |||||    
T  34576684 ttcat 34576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 244 - 393
Target Start/End: Original strand, 31313303 - 31313451
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| ||||| | | ||||||||||| ||||||| | ||||| ||||||||||||||||||||| | |||| ||||| ||||||||| |||||    
T  31313303 gcaaatgctaacttgtgccctcaagggcacatgttaaggaagtcattatagaaatatacgtatcaaaagtcatgcattcaactttttaaaagttgacata 31313402  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtgg 393  Q
    ||||| |||| ||||  ||| ||||||| ||||| |||||||||||||||    
T  31313403 ttatg-ttttccaatgcaaagttgctctttttagattgcttaacatgtgg 31313451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 244 - 392
Target Start/End: Original strand, 6530302 - 6530449
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| ||||| | | ||||||||||| ||||||||||||||  |||||||| | || ||||||||| |||| |||||||||||||| || |||    
T  6530302 gcaaatgctaacttgtgccctcaagggcacatgttaaggaacttattaaagaaatataagcataaaaagtcgtgcattcaacttcttaaaagtcaatata 6530401  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    ||||| |||| ||||  ||| ||||||| ||| ||||||||||||||||    
T  6530402 ttatg-ttttccaatgcaaagttgctctttttgggttgcttaacatgtg 6530449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 244 - 352
Target Start/End: Complemental strand, 39699731 - 39699623
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| ||||||||| |||| |||||| ||||||  |||||||  |||||||||||||||||||||| |||||||||| |||||||||||  ||    
T  39699731 gcaaatgctaacttgtgtcttcaaggacacatgttaaggagtttattataaaaatatacgtatcaaaagtcgtgcatttaactttttaaaagttaaagta 39699632  T
Q  344 ttatgtttt 352  Q
    |||||||||    
T  39699631 ttatgtttt 39699623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 8867182 - 8867286
Alignment:
Q  248 atgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattat 347  Q
    ||||||| ||||| ||| ||||||||||| ||| ||||| ||||| |||||||||| ||||||||| || |||| |||||||||||| |||| || ||||    
T  8867182 atgttaacttgtgccttgaagggcacatgttaaagaactcattatagaaatatacgcatcaaaagttgtgcattcaacttcttaaaaattaaaatgttat 8867281  T
Q  348 gtttt 352  Q
    |||||    
T  8867282 gtttt 8867286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 249 - 392
Target Start/End: Original strand, 13948947 - 13949089
Alignment:
Q  249 tgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttctt-aaaagttaacatattat 347  Q
    |||||||||||||||| || |||||||| |||| |||||||||| |||||||||||| ||||||||||  | | || ||||| |||||||||  ||| ||    
T  13948947 tgttaatttgtgtcttcaatggcacatgttaagaaacttattatagaaatatacgta-caaaagtcgtgtagtcaatttcttaaaaagttaaattatcat 13949045  T
Q  348 gttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    ||||||| |||||||| ||||||  |||| ||| |||||||||||    
T  13949046 gtttttt-aatataaagttgctcattttacgttccttaacatgtg 13949089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 17920277 - 17920220
Alignment:
Q  296 aatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttt 353  Q
    |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  17920277 aatatacgtatcaaaagtcgtacattcaacttcttaaaagttgaaatattatgttttt 17920220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 40505417 - 40505309
Alignment:
Q  246 aaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatatt 345  Q
    ||||| ||| ||||||| | || || ||||| ||||||||| |||||| |||||||  ||||||||||||| |||| ||||||||||||||||| ||||     
T  40505417 aaatgctaacttgtgtcctcaaaggtacatgttaaggaactcattatgaaaatatatatatcaaaagtcgtgcattcaacttcttaaaagttaaaatatc 40505318  T
Q  346 atgtttttt 354  Q
    || ||||||    
T  40505317 atatttttt 40505309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 42685706 - 42685814
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||||||||| | || | |||||||| ||||||| ||||||| |||||||  ||||||||||||||  | | ||||||| ||||||||| |||    
T  42685706 gcaaatgctaatttgtgcccttgaaggcacatg-taaggaatttattatagaaatatgtgtatcaaaagtcgtgtagtcaacttctaaaaagttaaaata 42685804  T
Q  344 ttatgttttt 353  Q
    ||||||||||    
T  42685805 ttatgttttt 42685814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 266 - 400
Target Start/End: Complemental strand, 8769141 - 8769009
Alignment:
Q  266 aagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaag-ttaacatattatgttttttcaatataaat 364  Q
    ||||||||||  ||||||||| ||||| |||||||| |||| |||||| || |||| |  |||||||||| |||| |||| || ||||  |||||||||     
T  8769141 aagggcacatcttaaggaactcattatagaaatatatgtataaaaagttgtgcattcatattcttaaaaggttaaaatatcatatttt--caatataaag 8769044  T
Q  365 ttgctctctttaggttgcttaacatgtggtcttagg 400  Q
    ||||||| |||||||| ||||||||||| |||||||    
T  8769043 ttgctct-tttaggtttcttaacatgtgctcttagg 8769009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 12703489 - 12703568
Alignment:
Q  283 aacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaa 363  Q
    |||||||||| ||||||||||||| |||| ||||||||| || |||| |||| |||| |||||||| ||||||||||||||    
T  12703489 aacttattatagaaatatacgtataaaaaatcgtacattcaatttctcaaaaattaaaatattatg-tttttcaatataaa 12703568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 21372447 - 21372585
Alignment:
Q  252 taatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttt 351  Q
    ||||||||| | | ||||| | ||| ||||||||||||||| |||||||||| || |||||||||  ||| ||||| |||||||||||  | ||||| ||    
T  21372447 taatttgtgccctcaagggaatatgttaaggaacttattatagaaatatacgcataaaaagtcgtgtattcaactttttaaaagttaaagtgttatg-tt 21372545  T
Q  352 tttcaatataaatttgctctctttaggttgcttaacatgt 391  Q
    || ||||  |||||| |||| || ||||| ||||||||||    
T  21372546 ttccaatgcaaatttactcttttcaggtttcttaacatgt 21372585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 401
Target Start/End: Original strand, 35865150 - 35865284
Alignment:
Q  266 aagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatt 365  Q
    ||||||| ||| ||||||||||||||| ||||||||| ||||||||||||   | | ||||| ||||||||||| ||||||| |||| | ||| |||| |    
T  35865150 aagggcatatgttaaggaacttattatagaaatatacatatcaaaagtcgcgtagtcaactttttaaaagttaaaatattatattttct-aatgtaaaat 35865248  T
Q  366 tgctctctttaggttgcttaacatgtggtcttaggg 401  Q
    | | || ||||||||  ||||||||||  |||||||    
T  35865249 tacactttttaggttctttaacatgtgtccttaggg 35865284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 45244677 - 45244763
Alignment:
Q  246 aaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaa 332  Q
    ||||||||| |||||||  ||| | |||||| ||| ||||| ||||| ||||||||||||| ||||||||| |||| ||||| ||||    
T  45244677 aaatgttaacttgtgtccctaaagacacatgttaatgaactcattatagaaatatacgtattaaaagtcgtgcattcaactttttaa 45244763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 7774631 - 7774700
Alignment:
Q  283 aacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||| ||||| |||||||| |||||||||||||| |||| |||||||||||  |||| || |||||||||    
T  7774631 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaatgttatgtttt 7774700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 7791278 - 7791347
Alignment:
Q  283 aacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||| ||||| |||||||| |||||||||||||| |||| |||||||||||  |||| || |||||||||    
T  7791278 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaatgttatgtttt 7791347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 7811862 - 7811931
Alignment:
Q  283 aacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||| ||||| |||||||| |||||||||||||| |||| |||||||||||  |||| || |||||||||    
T  7811862 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaatgttatgtttt 7811931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 39699942 - 39699873
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagt 313  Q
    ||||||| ||| ||||||||  ||||||| ||| |||||| ||||||||  |||||||||||||||||||    
T  39699942 gcaaatgctaacttgtgtctccaagggcagatgttaaggagcttattataaaaatatacgtatcaaaagt 39699873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 36680237 - 36680165
Alignment:
Q  278 taaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||| |||| ||||| ||||||||||||||||| ||||  |||| ||| ||||||| ||| ||||||||||||||    
T  36680237 taagaaactaattatagaaatatacgtatcaaatgtcg--cattcaacatcttaaatgttgacatattatgtttt 36680165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 13933214 - 13933105
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||||||||||||| ||| |||  |||| | |||  |||| ||||| ||||||||| ||| |||| ||||| | | ||||  |||||| |||| |||    
T  13933214 gcaaatgttaatttgtgccttcaagaacacacgttaacaaactcattatagaaatatacatattaaaattcgtatagtcaactctttaaaaattaaaata 13933115  T
Q  344 ttatgttttt 353  Q
    ||||||||||    
T  13933114 ttatgttttt 13933105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 5493450 - 5493362
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaa 333  Q
    |||||| ||| ||||| | | ||||||||||| |||| || | ||||| |||||| ||| |||||||||||| |||| ||||| |||||    
T  5493450 caaatgctaacttgtgccctcaagggcacatgttaagaaagtcattatagaaatacacgcatcaaaagtcgtgcattcaactttttaaa 5493362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 244 - 392
Target Start/End: Complemental strand, 20061220 - 20061073
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||||||| ||||| | | ||||||||||||||||||||| ||||| |||||||||||||||||||| || |||| ||||||||||||||| |||||    
T  20061220 gcaaatgttaacttgtgccctcaagggcacatgctaaggaactcattatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagttgacata 20061121  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    |||||| ||||||||  ||| ||||||| ||||||||||||||||||||    
T  20061120 ttatgt-ttttcaatgcaaagttgctctttttaggttgcttaacatgtg 20061073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 266 - 392
Target Start/End: Original strand, 14275773 - 14275898
Alignment:
Q  266 aagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatt 365  Q
    ||||||||||  ||||||||| ||||| ||||||||||||||||||||| | |||| ||||||||||||||||| |||||||| |||| ||||  ||| |    
T  14275773 aagggcacatattaaggaactcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaatatattatg-ttttccaatgcaaaat 14275871  T
Q  366 tgctctctttaggttgcttaacatgtg 392  Q
    |||||| ||| |||||||||| |||||    
T  14275872 tgctctttttgggttgcttaatatgtg 14275898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 25626387 - 25626319
Alignment:
Q  271 cacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  25626387 cacatgttaaggaacttattatagaaatatacgtatcaaaagtcgtacattcaacttcttaaaagttaa 25626319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 392
Target Start/End: Complemental strand, 32294653 - 32294528
Alignment:
Q  266 aagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatt 365  Q
    ||||||||||| ||||||||| ||||| |||||||| |||| ||||||||| |||| ||||||| |||||| ||  ||||||| |||| |||| ||||||    
T  32294653 aagggcacatgttaaggaactcattatagaaatatatgtattaaaagtcgtgcattcaacttctgaaaagtcaaactattatg-ttttccaatgtaaatt 32294555  T
Q  366 tgctctctttaggttgcttaacatgtg 392  Q
    |||||| ||||||||  ||||||||||    
T  32294554 tgctctttttaggttctttaacatgtg 32294528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 392
Target Start/End: Complemental strand, 39420336 - 39420211
Alignment:
Q  266 aagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatt 365  Q
    ||||||||||| ||||||||| ||||| ||||||||| ||| ||| ||||| |||| |||||||| |||||||| |||||||| |||| ||||  ||| |    
T  39420336 aagggcacatgttaaggaactcattatagaaatatacatattaaatgtcgtgcattcaacttcttgaaagttaaaatattatg-ttttccaatgcaaagt 39420238  T
Q  366 tgctctctttaggttgcttaacatgtg 392  Q
    |||||| |||||||| |||||||||||    
T  39420237 tgctctttttaggttccttaacatgtg 39420211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 278 - 392
Target Start/End: Original strand, 36284995 - 36285108
Alignment:
Q  278 taaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctctctttag 377  Q
    |||||||| ||||||  |||||||| ||| |||||| ||||||| ||||||||||||||||| ||||||| ||||||||||  ||| ||||||| ||||     
T  36284995 taaggaacatattataaaaatatacatattaaaagttgtacattcaacttcttaaaagttaaaatattat-ttttttcaatgcaaaattgctctttttat 36285093  T
Q  378 gttgcttaacatgtg 392  Q
    |||| ||||||||||    
T  36285094 gttgtttaacatgtg 36285108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 353
Target Start/End: Complemental strand, 13487866 - 13487759
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaa-gtcgtacatttaacttcttaaaagttaacata 343  Q
    |||||| |||||| |||| ||||||||||||| ||| ||||| ||||| ||| ||  |||||||||| || || |||||||||||||||||||||| |||    
T  13487866 caaatgctaatttttgtccttaagggcacatgttaaagaactaattatagaagta--cgtatcaaaaagttgtgcatttaacttcttaaaagttaaaata 13487769  T
Q  344 ttatgttttt 353  Q
    ||||||||||    
T  13487768 ttatgttttt 13487759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 244 - 401
Target Start/End: Original strand, 25626469 - 25626625
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| ||||| | | ||| ||||||| ||| ||||||||||| |||||||||||||||||||||||  | | |||||||||||||||||  ||    
T  25626469 gcaaatgctaacttgtgccctcaagagcacatgttaaagaacttattattgaaatatacgtatcaaaagtcgtgtagtcaacttcttaaaagttaaatta 25626568  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtggtcttaggg 401  Q
    | |||||||  ||||  ||| ||| ||  |||||||| |||||||||||  |||||||    
T  25626569 tcatgttttc-caattcaaagttgttcattttaggttccttaacatgtgcccttaggg 25626625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 270 - 391
Target Start/End: Original strand, 30549081 - 30549201
Alignment:
Q  270 gcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgct 369  Q
    ||||||| |||||||||  |||| ||||||||||||||||||||||| || | ||||||||||| |||||  ||| ||||||||| |||  |||||||||    
T  30549081 gcacatgttaaggaactctttatagaaatatacgtatcaaaagtcgtgcaatcaacttcttaaacgttaaattatcatgtttttt-aatgcaaatttgct 30549179  T
Q  370 ctctttaggttgcttaacatgt 391  Q
    |  |||| ||| ||||||||||    
T  30549180 cattttaagttccttaacatgt 30549201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 39364445 - 39364526
Alignment:
Q  271 cacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||||| ||||||||||||||| ||||||| | |||||||||||||| | | ||||||| ||||||||| ||||||||||||    
T  39364445 cacatgttaaggaacttattatagaaatatgcatatcaaaagtcgtatagtaaacttctaaaaagttaaaatattatgtttt 39364526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 245 - 336
Target Start/End: Original strand, 2889103 - 2889194
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagt 336  Q
    |||||||||| ||||| | | ||||||||||| ||| |||||||||||  ||||| || |||||||| ||||||||| ||||||||||||||    
T  2889103 caaatgttaacttgtgccctcaagggcacatgttaatgaacttattataaaaatacacatatcaaaattcgtacattcaacttcttaaaagt 2889194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 41890117 - 41890043
Alignment:
Q  278 taaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||| |||||||||| |||||||||| |||||||||||| |||| |||||||||||| |||| || |||||||||    
T  41890117 taagaaacttattatagaaatatacgcatcaaaagtcgtgcattcaacttcttaaaaattaaaatgttatgtttt 41890043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 9950285 - 9950373
Alignment:
Q  264 ttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||||||||||  ||||||| ||||||| ||||||||||||  ||||||||| || | ||||| | ||||||||| ||||||||||||    
T  9950285 ttaagggcacatattaaggaatttattatagaaatatacgtactaaaagtcgtgcagtcaacttttaaaaagttaaaatattatgtttt 9950373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 245 - 353
Target Start/End: Complemental strand, 44068946 - 44068838
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    ||||||||||||||||   | || | |||||| ||||||| | ||||| |||||||| |||||||||||||| || | |||||||||||||||||  |||    
T  44068946 caaatgttaatttgtgctctcaaagacacatgttaaggaattcattatagaaatatatgtatcaaaagtcgtgcaatcaacttcttaaaagttaaattat 44068847  T
Q  345 tatgttttt 353  Q
     ||||||||    
T  44068846 catgttttt 44068838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 294 - 388
Target Start/End: Original strand, 15079874 - 15079967
Alignment:
Q  294 gaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctctctttaggttgcttaaca 388  Q
    ||||||||| || |||||||||| |||| |||||||||||||||||  ||| ||  ||||||||| |||| ||||||| |||||||| |||||||    
T  15079874 gaaatatacatagcaaaagtcgtgcattcaacttcttaaaagttaaactatcat-atttttcaatgtaaaattgctctttttaggtttcttaaca 15079967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 353
Target Start/End: Original strand, 2290276 - 2290365
Alignment:
Q  264 ttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttt 353  Q
    |||||| |||||| ||||| ||| |||||  ||||||| ||||| ||| |||| ||||||||||||||  |||||| |||||||||||||    
T  2290276 ttaaggtcacatgttaaggcactcattataaaaatatatgtatcgaaattcgtgcatttaacttcttactagttaaaatattatgttttt 2290365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 36278402 - 36278310
Alignment:
Q  308 aaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctctctttaggttgcttaacatgtggtcttaggg 401  Q
    |||| |||| |||||||||| |||||| |||| ||||||| ||||  ||||| ||| ||||||| |||||||| ||||||||||| ||||||||    
T  36278402 aaaaatcgtccatttaactttttaaaaattaaaatattatattttc-caatacaaagttgctctttttaggttccttaacatgtgttcttaggg 36278310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 363
Target Start/End: Original strand, 13349710 - 13349777
Alignment:
Q  295 aaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaa 363  Q
    ||||||| ||||||||||||||||||| || || ||||||||||| |||||||  ||||||||||||||    
T  13349710 aaatataagtatcaaaagtcgtacattcaattttttaaaagttaaaatattat-atttttcaatataaa 13349777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 391
Target Start/End: Original strand, 36528402 - 36528489
Alignment:
Q  303 gtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctctctttaggttgcttaacatgt 391  Q
    |||||||||||||| |||| ||||||||||||||| |||| ||||| |||| ||||  |||  |||||| |||| ||||||||||||||    
T  36528402 gtatcaaaagtcgtgcattcaacttcttaaaagttgacatgttatg-ttttccaatgcaaagctgctctttttaagttgcttaacatgt 36528489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 15135370 - 15135437
Alignment:
Q  280 aggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattat 347  Q
    ||||| ||||||| ||||||||||||||||| ||| | |||||||||| ||||| ||||| |||||||    
T  15135370 aggaatttattatagaaatatacgtatcaaaggtcatgcatttaacttattaaaggttaaaatattat 15135437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 4828866 - 4828932
Alignment:
Q  286 ttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||||| ||| | ||||||| |||| ||||||||| ||||||||||||||| ||||||||| ||||    
T  4828866 ttattattgaattttacgtattaaaaatcgtacattcaacttcttaaaagttgacatattatatttt 4828932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 409894 - 409990
Alignment:
Q  244 gcaaatgttaatttgtgtctttaa-gggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    ||||||||||| ||||| ||| || ||||| ||| |||||||||  |||| |||||| || ||||||||||||| || | ||||||| |||||||||    
T  409894 gcaaatgttaacttgtgccttcaaagggcatatgttaaggaactcgttatagaaataaacttatcaaaagtcgtgcagtcaacttctcaaaagttaa 409990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 7061540 - 7061620
Alignment:
Q  264 ttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    ||||| ||||||| ||| ||||||||||| |||||||| | ||||||||||||  | | ||||||| ||||||||| ||||    
T  7061540 ttaagagcacatgttaaagaacttattatagaaatatatgcatcaaaagtcgtgtaataaacttctaaaaagttaaaatat 7061620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 7743852 - 7743795
Alignment:
Q  282 gaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    ||||| ||||| |||||||| | ||| |||||||| || |||||||||||||||||||    
T  7743852 gaactcattatagaaatatatgcatcgaaagtcgtgcagttaacttcttaaaagttaa 7743795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 337
Target Start/End: Original strand, 37230557 - 37230650
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagtt 337  Q
    ||||||| ||| ||||| ||| |||| ||||||  |||||| | |||||  ||||||| |||||||||||| | |||| || ||||||||||||    
T  37230557 gcaaatgctaacttgtgccttcaaggacacatgtaaaggaaatcattatataaatatatgtatcaaaagtcatgcattcaatttcttaaaagtt 37230650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 30944305 - 30944257
Alignment:
Q  304 tatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||||||| ||||||||| ||||| ||||||||| | ||||||||||||    
T  30944305 tatcaaaaatcgtacattcaactttttaaaagttgaaatattatgtttt 30944257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 244 - 401
Target Start/End: Original strand, 32786786 - 32786942
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| ||||| | | ||||||||||| ||||||||| |||||  |||||||||||||||||||||| |||| ||||||||||||||||| |||    
T  32786786 gcaaatgctaacttgtgccctcaagggcacatgttaaggaactcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaata 32786885  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtggtcttaggg 401  Q
    ||||| |||| ||||| ||| ||||||| ||  |||| |||||||||||  |||||||    
T  32786886 ttatg-ttttccaatacaaagttgctcttttcgggttccttaacatgtgcccttaggg 32786942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 28337222 - 28337346
Alignment:
Q  266 aagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatt 365  Q
    ||||||||||| |||| |||| ||||| |||||||| |||| |||| |||| || | ||||||||||||||||| ||| |||  |||||||||  ||| |    
T  28337222 aagggcacatgttaagaaactcattatagaaatatatgtataaaaaatcgtgcaatcaacttcttaaaagttaaaatactat-atttttcaatgcaaagt 28337320  T
Q  366 tgctctctttaggttgcttaacatgt 391  Q
    |||||| ||||| || ||||||||||    
T  28337321 tgctctttttagattccttaacatgt 28337346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 39837533 - 39837457
Alignment:
Q  277 ctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttt 353  Q
    |||||||| | ||||| |||||| |||||||||||||||| |||| ||||||||||||||| || |||||| |||||    
T  39837533 ctaaggaattaattatagaaatacacgtatcaaaagtcgtgcattcaacttcttaaaagttgacctattatattttt 39837457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 34964125 - 34964030
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    ||||||| ||| |||||||||||||||  |||| ||| ||| | ||||| ||||||||  ||||||||||||| || ||||||||| |||||||||    
T  34964125 gcaaatgctaacttgtgtctttaagggtgcatgttaaagaattcattatagaaatatatttatcaaaagtcgtgcagttaacttctaaaaagttaa 34964030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 47390630 - 47390572
Alignment:
Q  295 aaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttt 353  Q
    |||||||||||| |||||||||||||| |||||||| |||||| | |||||||||||||    
T  47390630 aaatatacgtattaaaagtcgtacattcaacttcttgaaagttcaaatattatgttttt 47390572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 392
Target Start/End: Original strand, 24331030 - 24331126
Alignment:
Q  295 aaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    ||||||||||||||||||||||  ||| | |||||||||| || ||||||||| |||||| ||| || | ||||||| |||| |||| ||||||||||    
T  24331030 aaatatacgtatcaaaagtcgtgtattaagcttcttaaaaattgacatattatatttttt-aatgtatagttgctctttttatgttgtttaacatgtg 24331126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 392
Target Start/End: Original strand, 45837804 - 45837951
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||||||||| |   ||||||||||| ||||  ||| ||||| |||||| || ||||||| | ||| |||| ||||| |||||||||  ||||    
T  45837804 gcaaatgctaatttgtgcccacaagggcacatgttaagatactcattatagaaatacacatatcaaacggcgtgcattcaacttattaaaagttgtcata 45837903  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    || || |||| ||||  ||| ||||||| ||||| ||||||||||||||    
T  45837904 ttgtg-ttttccaatgcaaagttgctctttttagattgcttaacatgtg 45837951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 25119768 - 25119843
Alignment:
Q  278 taaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttt 353  Q
    |||| |||||||| | |||||| |||||  ||||||||| ||||| |||||||||||||||| |||||||| ||||    
T  25119768 taagaaacttattgtagaaatacacgtactaaaagtcgtgcatttgacttcttaaaagttaaaatattatgatttt 25119843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 352
Target Start/End: Complemental strand, 26081137 - 26081030
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    |||||| ||| ||||||| | || |||||||  ||||||||| ||||| ||||||||| ||| |||| | || |  | ||||||||||||||||| ||||    
T  26081137 caaatgctaacttgtgtcctcaatggcacatattaaggaactcattatagaaatatacatattaaaaattgtgccgtcaacttcttaaaagttaaaatat 26081038  T
Q  345 tatgtttt 352  Q
    ||||||||    
T  26081037 tatgtttt 26081030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 352
Target Start/End: Complemental strand, 26104924 - 26104817
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    |||||| ||| ||||||| | || |||||||  ||||||||| ||||| ||||||||| ||| |||| | || |  | ||||||||||||||||| ||||    
T  26104924 caaatgctaacttgtgtcctcaatggcacatattaaggaactcattatagaaatatacatattaaaaattgtgccgtcaacttcttaaaagttaaaatat 26104825  T
Q  345 tatgtttt 352  Q
    ||||||||    
T  26104824 tatgtttt 26104817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 31054228 - 31054272
Alignment:
Q  303 gtatcaaaagtcgtacatttaacttcttaaaagttaacatattat 347  Q
    |||| |||||||||||||| ||||||||||||||||| |||||||    
T  31054228 gtattaaaagtcgtacattcaacttcttaaaagttaaaatattat 31054272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 32546704 - 32546798
Alignment:
Q  246 aaatgttaatttgtgtc-tttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    ||||||||| ||||| | |||||||||||| | |||  ||||  |||| |||||||||| |||||||||||  || | |||||||||||||||||    
T  32546704 aaatgttaacttgtgccctttaagggcacacgttaaaaaactccttatagaaatatacgcatcaaaagtcgggcaatcaacttcttaaaagttaa 32546798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 244 - 392
Target Start/End: Complemental strand, 11018107 - 11017960
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||||||| |||||   | ||||||||||| ||||||||||||||| ||||||||||||| ||||||||| || | |||||||||||||||||  ||    
T  11018107 gcaaatgttaacttgtgctctcaagggcacatgttaaggaacttattatagaaatatacgtattaaaagtcgtgcagtcaacttcttaaaagttaaatta 11018008  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    | ||| |||| ||||  ||| ||||||  |||||||| |||||||||||    
T  11018007 tcatg-ttttccaatgcaaagttgctcattttaggttccttaacatgtg 11017960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 245 - 353
Target Start/End: Original strand, 1035565 - 1035673
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    |||||||||| ||||| | | ||||||||||| ||||||||| ||||| ||||||||| ||||||||||| | |||| ||||| ||||||||||| ||||    
T  1035565 caaatgttaacttgtgccctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcttgcattcaacttattaaaagttaaaatat 1035664  T
Q  345 tatgttttt 353  Q
    ||| |||||    
T  1035665 tatattttt 1035673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 31635465 - 31635545
Alignment:
Q  272 acatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||| ||||||| | ||||||||||||||| ||| ||||||||| |||| ||||||||||||||||| ||||||||||||    
T  31635465 acatgttaaggaattcattatggaaatatacatattaaaagtcgtgcattcaacttcttaaaagttaaaatattatgtttt 31635545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 36012582 - 36012486
Alignment:
Q  243 agcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    |||||||||||| |||||  |||| ||||||||| ||| ||||||||||| |||||||| ||||  ||||||||||| | |||||||||||| ||||    
T  36012582 agcaaatgttaacttgtgcttttacgggcacatgttaaagaacttattatagaaatataagtattgaaagtcgtacaatcaacttcttaaaaattaa 36012486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 245 - 392
Target Start/End: Complemental strand, 5799903 - 5799757
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    |||||| ||| ||||| | | |||| || ||| ||||||| |||||||  |||||||| |||||||||| || |||| ||||||||||| ||| ||||||    
T  5799903 caaatgctaacttgtgccctcaaggacatatgttaaggaagttattataaaaatatacatatcaaaagttgtgcattcaacttcttaaaggttgacatat 5799804  T
Q  345 tatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    || | |||||||||  |||  |||||| ||||||||| ||||||||||    
T  5799803 tacg-tttttcaatgcaaaactgctctttttaggttgtttaacatgtg 5799757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 37316738 - 37316595
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    ||||| ||||||||  |||| |||| || ||| ||||||||| |||||  ||||||| ||||||||| ||||  ||||||||||||||||||||| || |    
T  37316738 caaatattaatttgcatcttcaaggacaaatgttaaggaactcattataaaaatatatgtatcaaaaatcgtgtatttaacttcttaaaagttaa-atgt 37316640  T
Q  345 tatgttttttcaatataaatttgctctctttaggttgcttaacatgt 391  Q
    |||||||||| ||| |||| || || ||||||| || ||||||||||    
T  37316639 tatgtttttt-aatgtaaaattact-tctttagattccttaacatgt 37316595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 16394821 - 16394930
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| ||||||||| ||||  ||||| ||||||||| |||||  |||||||||||| |||||||| ||| |  ||||||||||||||||  ||    
T  16394821 gcaaatgctaacttgtgtcttcaaggatacatgttaaggaactcattataaaaatatacgtattaaaagtcgaacagtctacttcttaaaagttaaatta 16394920  T
Q  344 ttatgttttt 353  Q
    | ||||||||    
T  16394921 tcatgttttt 16394930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 29033101 - 29033009
Alignment:
Q  246 aaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagtta 338  Q
    ||||| ||||||||| ||| || | |||||| ||||||| | | ||| |||||||||||||||||||| || |||| ||||||||||||||||    
T  29033101 aaatgctaatttgtgccttcaatgacacatgttaaggaaatcagtatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagtta 29033009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 266 - 392
Target Start/End: Original strand, 25366753 - 25366878
Alignment:
Q  266 aagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatt 365  Q
    |||| |||||| ||||||||| | ||| ||| ||| |||||||||||||||  | | ||||| |||||||||||  ||||||| |||  |||||||||||    
T  25366753 aaggacacatgttaaggaactcaatatagaattatccgtatcaaaagtcgtgtaataaactttttaaaagttaaactattatg-tttcccaatataaatt 25366851  T
Q  366 tgctctctttaggttgcttaacatgtg 392  Q
    | |||| |||| ||| |||||||||||    
T  25366852 tactctttttaagtttcttaacatgtg 25366878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 28490662 - 28490554
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    |||||| |||||||||   |||| | |||||| ||||||| | ||||| ||||||||| |||||||| |||| || | ||||||| ||||||||| ||||    
T  28490662 caaatgctaatttgtgctcttaatgacacatgttaaggaattcattatagaaatatacatatcaaaa-tcgtgcaatcaacttctaaaaagttaaaatat 28490564  T
Q  345 tatgtttttt 354  Q
    ||||||||||    
T  28490563 tatgtttttt 28490554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 41884780 - 41884683
Alignment:
Q  248 atgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatatt 345  Q
    ||||||| ||||| | | || |||||||| |||| |||| ||||| |||| |||| ||||||||||| | ||||| |||||||||||||||| |||||    
T  41884780 atgttaacttgtgccctcaatggcacatgttaagtaactcattatagaaacatacatatcaaaagtcatgcatttgacttcttaaaagttaaaatatt 41884683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 352
Target Start/End: Original strand, 16583152 - 16583259
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    ||||| |||||||||||  | ||  ||||||| |||||||||||||||  ||| ||||||||||||||||||  | | |||||||||| ||||||  |||    
T  16583152 caaatattaatttgtgttctcaaaagcacatgttaaggaacttattataaaaacatacgtatcaaaagtcgtgtagtcaacttcttaatagttaaattat 16583251  T
Q  345 tatgtttt 352  Q
     |||||||    
T  16583252 catgtttt 16583259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 369
Target Start/End: Original strand, 4084727 - 4084818
Alignment:
Q  277 ctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgct 369  Q
    ||||| |||||||||| ||||||||||||| |||||||||  | | ||||| |||||||||||   || ||| ||||||||| ||||||||||    
T  4084727 ctaagtaacttattatagaaatatacgtattaaaagtcgtgtagtcaactttttaaaagttaaataatcatg-tttttcaatgtaaatttgct 4084818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 352
Target Start/End: Original strand, 31262588 - 31262663
Alignment:
Q  278 taaggaacttattatggaaatata-cgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||| |||| ||||| |||||||| | |||||||| | || |||| ||||||||||||||| ||||||||||||||    
T  31262588 taagaaactcattatagaaatataacatatcaaaaattgtgcattcaacttcttaaaagttgacatattatgtttt 31262663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 950055 - 950124
Alignment:
Q  247 aatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgt 316  Q
    ||||||||  |||||| |||| | |||||| |||| |||| ||||| ||| |||||||||||||||||||    
T  950055 aatgttaacatgtgtcattaatgacacatgttaagcaactcattatagaagtatacgtatcaaaagtcgt 950124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 243 - 392
Target Start/End: Complemental strand, 27918502 - 27918354
Alignment:
Q  243 agcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacat 342  Q
    |||||||| ||| ||||| | | |||| |||||| |||||||||  |||| |||||||| |||||||||||||| |||| ||||||||||||||||| ||    
T  27918502 agcaaatgctaacttgtgccctcaaggacacatgttaaggaactcgttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaaat 27918403  T
Q  343 attatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    |||||  |||||||||  ||| ||||||| ||| | || |||||||||||    
T  27918402 attat-atttttcaatgcaaaattgctctttttggattccttaacatgtg 27918354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 34936467 - 34936371
Alignment:
Q  294 gaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctctctttaggttgcttaacatgt 391  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| |||| |||  |||||||||    
T  34936467 gaaatatatgtatcgaaagtcgtacatttaactttttaaaagttaaaatattatgtttttt-aatataaagttgctctttttaagttttttaacatgt 34936371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 244 - 402
Target Start/End: Original strand, 24940627 - 24940783
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| ||||  ||| ||||||||||| |||  |||||||||  ||||||||   || ||||||||| |||| ||||||||||||||||| |||    
T  24940627 gcaaatgctaacttgtaccttcaagggcacatgttaaa-aacttattaaagaaatataaacataaaaagtcgtgcattcaacttcttaaaagttaatata 24940725  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtggtcttaggga 402  Q
    ||||| |||||||||  ||| ||||||| ||| | |||||||||||||| |||||||||    
T  24940726 ttatg-tttttcaatgcaaacttgctctttttggattgcttaacatgtgctcttaggga 24940783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 30033658 - 30033589
Alignment:
Q  269 ggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagtta 338  Q
    |||||||| ||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||    
T  30033658 ggcacatgttaaggaatttattatagaaataaacgtatcaaaagtcgtacatttgacttcttaaaagtta 30033589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 45250052 - 45249947
Alignment:
Q  247 aatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatatta 346  Q
    |||||||| ||||| | | |||||||||||||||| || || |||| ||||||| | ||||||||||||| |||| |||||||||||| |||| ||||||    
T  45250052 aatgttaacttgtgccctcaagggcacatgctaagaaattttttatagaaatattcatatcaaaagtcgtgcattcaacttcttaaaatttaaaatatta 45249953  T
Q  347 tgtttt 352  Q
    ||||||    
T  45249952 tgtttt 45249947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 1961606 - 1961701
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    ||||||||||||||||| | | ||||||||||| |||  |||||||||| ||||||||  ||||||||||||| |||| ||||||| |||||||||    
T  1961606 gcaaatgttaatttgtgccctcaagggcacatgttaaaaaacttattatagaaatataaatatcaaaagtcgtgcattcaacttctaaaaagttaa 1961701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 36989829 - 36989938
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagtt-aacat 342  Q
    ||||||||||| ||||||| | ||||||||||  |||| |||| |||||  |||||||| ||| ||||||||| |||| ||||||||||||||| || ||    
T  36989829 gcaaatgttaacttgtgtcctcaagggcacatattaagaaactcattataaaaatatacatattaaaagtcgtgcattcaacttcttaaaagttcaaaat 36989928  T
Q  343 attatgtttt 352  Q
    ||||||||||    
T  36989929 attatgtttt 36989938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 352
Target Start/End: Complemental strand, 564276 - 564168
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||||||| ||||||| | ||||| ||||| ||||||  ||||||| ||||||||||||| |||| | || ||||| ||||||||||| |||| ||     
T  564276 gcaaatgttaacttgtgtcctcaagggtacatgttaaggagtttattatagaaatatacgtattaaaaattgtgcatttgacttcttaaaaattaaaatg 564177  T
Q  344 ttatgtttt 352  Q
    |||||||||    
T  564176 ttatgtttt 564168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 245 - 392
Target Start/End: Complemental strand, 54997867 - 54997720
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    |||||||||| ||||| | | || |||||||| ||||  ||| ||||| |||||| || ||||||||  ||| |||| |||||||||||||||   ||||    
T  54997867 caaatgttaacttgtgccatcaatggcacatgttaagatactcattatagaaataaacatatcaaaatgcgtgcattcaacttcttaaaagttgtaatat 54997768  T
Q  345 tatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    |  |||||| ||||  ||| ||||||| ||||||||||||||||||||    
T  54997767 tgcgtttttccaatgcaaaattgctctttttaggttgcttaacatgtg 54997720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 41460054 - 41459941
Alignment:
Q  242 tagcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagtta-ac 340  Q
    ||||||||||||| ||| ||||| |||  || ||| |||| |||||||||| ||||||||||||| |||| ||||  |||| ||||||||||||||| |     
T  41460054 tagcaaatgttaacttgggtcttcaagaacatatgttaagaaacttattatagaaatatacgtattaaaaatcgtgtatttgacttcttaaaagttacaa 41459955  T
Q  341 atattatgtttttt 354  Q
     |||||||||||||    
T  41459954 gtattatgtttttt 41459941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 1009033 - 1008953
Alignment:
Q  272 acatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||| |||| || ||||| | |||||||| |||||||||||| |||||| |||| |||||||||||| ||||||||||||    
T  1009033 acatgttaagaaatttattgtagaaatatatgtatcaaaagtcatacattcaactacttaaaagttaaaatattatgtttt 1008953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 244 - 392
Target Start/End: Complemental strand, 28675850 - 28675703
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| || |||| ||||||||||||| ||||||| | ||||| ||||||||| |||||||| |  | |||| ||||  ||||||||  | |||    
T  28675850 gcaaatgctaacttatgtccttaagggcacatgttaaggaagtcattatagaaatatacatatcaaaatttttgcattcaactgtttaaaagtcgatata 28675751  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    ||||||||| | |||  ||| |||||||  |||||||||||||||||||    
T  28675750 ttatgttttct-aatgcaaaattgctcttattaggttgcttaacatgtg 28675703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 244 - 392
Target Start/End: Complemental strand, 50297802 - 50297655
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| ||||| | | ||||||||||| ||||  ||| ||||| |||||| || ||||||||| ||| |||| |||||||||||||||  ||||    
T  50297802 gcaaatgctaacttgtgccctcaagggcacatgttaagatactcattatagaaatacacatatcaaaaggcgtgcattcaacttcttaaaagttgtcata 50297703  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    || || |||| ||||  ||| || |||| ||| ||||||||||||||||    
T  50297702 ttgtg-ttttccaatgcaaaattactcttttttggttgcttaacatgtg 50297655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 14138973 - 14139079
Alignment:
Q  246 aaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatatt 345  Q
    ||||||||| ||||| ||| ||||||||||| ||| ||||   |||| |||||||||||||||||| ||||  | | || |||||||||||||| |||||    
T  14138973 aaatgttaacttgtgccttcaagggcacatgttaatgaaccctttatagaaatatacgtatcaaaaatcgtgtagtcaatttcttaaaagttaaaatatt 14139072  T
Q  346 atgtttt 352  Q
    || ||||    
T  14139073 atatttt 14139079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 246 - 352
Target Start/End: Complemental strand, 20537466 - 20537360
Alignment:
Q  246 aaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatatt 345  Q
    ||||||||||||||| | | ||||||| ||| ||||||||| |||||  ||||||||| |  |||||| ||| ||| ||||||||| || |||| |||||    
T  20537466 aaatgttaatttgtgccctcaagggcatatgttaaggaactcattataaaaatatacgcactaaaagttgtatattcaacttcttagaaattaaaatatt 20537367  T
Q  346 atgtttt 352  Q
    |||||||    
T  20537366 atgtttt 20537360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 54719762 - 54719692
Alignment:
Q  269 ggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    |||||||| ||||||| ||||||| ||||||||| ||| |||||||||| | | |||||||||||||||||    
T  54719762 ggcacatgttaaggaatttattatagaaatatacttattaaaagtcgtatagtcaacttcttaaaagttaa 54719692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 39259995 - 39260088
Alignment:
Q  246 aaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    ||||||||||||||| ||||||| ||| ||| ||||||||  |||||  ||||||||| || |||||| || |||| |||||||||||| ||||    
T  39259995 aaatgttaatttgtgcctttaagagcagatgttaaggaacccattataaaaatatacgcataaaaagttgtgcattcaacttcttaaaaattaa 39260088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 352
Target Start/End: Complemental strand, 42051277 - 42051169
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| ||||| | | |||| |||||  ||| ||||| |||||  ||||||| |||||||||||||| |||| ||||| ||||||||||| |||    
T  42051277 gcaaatgctaacttgtgccatcaaggacacatattaatgaactcattataaaaatatatgtatcaaaagtcgtgcattcaacttgttaaaagttaaaata 42051178  T
Q  344 ttatgtttt 352  Q
    |||| ||||    
T  42051177 ttatatttt 42051169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 24743982 - 24744052
Alignment:
Q  282 gaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||| ||||| |||||||||| || |||||||||||||| |||||||| ||| |||| || |||||||||    
T  24743982 gaactcattatagaaatatacgcattaaaagtcgtacattcaacttctttaaaattaaaatgttatgtttt 24744052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 29508720 - 29508816
Alignment:
Q  304 tatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctctctttaggttgcttaacatgtggtcttaggg 401  Q
    |||||||||||||  ||| ||||||||||||||| | |||||||| |||| ||||  ||| ||||||| ||| |||| |||||||||||  |||||||    
T  29508720 tatcaaaagtcgtgtattcaacttcttaaaagtttaaatattatg-ttttccaatgcaaaattgctctttttgggttccttaacatgtgcccttaggg 29508816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 26546007 - 26546094
Alignment:
Q  246 aaatgttaatttgtgtcttta-agggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaa 332  Q
    ||||||||| ||||||||||  ||| |||||| |||  || |||||||  |||||||| ||| ||||||||| |||||||||||||||    
T  26546007 aaatgttaacttgtgtcttttgaggacacatgttaaaaaagttattataaaaatatacatattaaaagtcgtgcatttaacttcttaa 26546094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 40311791 - 40311735
Alignment:
Q  296 aatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||||||||||||||||||||  | | || ||||||||| |||| ||||||||||||    
T  40311791 aatatacgtatcaaaagtcgtgtagtcaatttcttaaaaattaaaatattatgtttt 40311735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 40321867 - 40321811
Alignment:
Q  296 aatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||||||||||||||||||||  | | || ||||||||| |||| ||||||||||||    
T  40321867 aatatacgtatcaaaagtcgtgtagtcaatttcttaaaaattaaaatattatgtttt 40321811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 47006592 - 47006700
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||||||| ||||| | | ||||||||||| |||||||||| |||| ||||||| || |||||||||||| |||| |||||||||||| |||| ||     
T  47006592 gcaaatgttaacttgtgccctcaagggcacatgttaaggaactttttatagaaatattcgcatcaaaagtcgtgcattcaacttcttaaaatttaaaatg 47006691  T
Q  344 ttatgtttt 352  Q
    |||||||||    
T  47006692 ttatgtttt 47006700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 245 - 352
Target Start/End: Complemental strand, 48192731 - 48192624
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    |||||||||||||||  ||| |||| |||||| |||| |||||||||| ||||||||| ||| |||| |||  |||| ||||||||||||||| ||||||    
T  48192731 caaatgttaatttgtaccttcaaggacacatgttaagaaacttattatagaaatatacttattaaaaatcgcgcattcaacttcttaaaagttgacatat 48192632  T
Q  345 tatgtttt 352  Q
    ||||||||    
T  48192631 tatgtttt 48192624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 244 - 392
Target Start/End: Original strand, 17587052 - 17587200
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    |||||| |||| ||||| | | ||||||||||| ||| |||||| | || |||| |||||||||||||||||| |||| ||| |||||||||||||  ||    
T  17587052 gcaaatattaacttgtgccctcaagggcacatgttaatgaacttgtaatagaaaaatacgtatcaaaagtcgtgcattcaacatcttaaaagttaatcta 17587151  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    || | ||||||||||  ||| || |||  ||| ||||||||||||||||    
T  17587152 ttgttttttttcaatgcaaagttactcattttgggttgcttaacatgtg 17587200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 271 - 401
Target Start/End: Complemental strand, 53741414 - 53741288
Alignment:
Q  271 cacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctc 370  Q
    |||||| ||| ||| | ||||| ||||||||||||||||||||| |||||| |||||||||||||||||||   |||||||||| |||| | | ||||||    
T  53741414 cacatgttaaagaattcattatagaaatatacgtatcaaaagtcatacattcaacttcttaaaagttaaca---tatgtttttt-aatacatagttgctc 53741319  T
Q  371 tctttaggttgcttaacatgtggtcttaggg 401  Q
    ||||| ||||| ||||| ||||  |||||||    
T  53741318 tctttgggttgtttaacttgtgcccttaggg 53741288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 272 - 391
Target Start/End: Original strand, 37919182 - 37919299
Alignment:
Q  272 acatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctct 371  Q
    ||||| |||| |||| |||||  ||||||||||||||||| | || |||| ||||||||||||||| |||||||||| |||| |||| |||| ||| |||    
T  37919182 acatgttaagaaactcattatataaatatacgtatcaaaaattgtgcattcaacttcttaaaagttgacatattatg-ttttccaatgtaaagttgttct 37919280  T
Q  372 ctttaggttgcttaacatgt 391  Q
     |||| ||||||||||||||    
T  37919281 -tttatgttgcttaacatgt 37919299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 244 - 391
Target Start/End: Complemental strand, 47069382 - 47069238
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||||||| ||| | | ||||||||||||  ||||||| ||||||||||||||||| ||||||||||||| || | ||||| |||||||| ||  ||    
T  47069382 gcaaatgttaacttgcgcccttaagggcacattttaaggaatttattatggaaatatacatatcaaaagtcgtgcagtcaactt-ttaaaagtcaaatta 47069284  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgt 391  Q
    | ||  ||||||||| |||| ||||||  |||||||| ||||||||||    
T  47069283 tcat-atttttcaatgtaaa-ttgctcattttaggttccttaacatgt 47069238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 33791526 - 33791583
Alignment:
Q  295 aaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||    
T  33791526 aaatatacgtatcaaatgtcgtacattcaactttttaaaagttaaaatattatgtttt 33791583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 47850089 - 47849980
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||||||||||||||| | |||| |||||| ||||||||| ||||| ||||||||  |||||||| || | ||||  |||| |||||| |||| |||    
T  47850089 gcaaatgttaatttgtgtcctcaaggacacatgttaaggaactcattatagaaatatatctatcaaaattcatgcattcgactttttaaaaattaaaata 47849990  T
Q  344 ttatgttttt 353  Q
    |||| |||||    
T  47849989 ttatattttt 47849980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 244 - 392
Target Start/End: Original strand, 18029984 - 18030131
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||||||| || || | | ||||||||||| ||||||||||| ||  |||||||| |||  ||||||||| |||| || ||||||||||| || |||    
T  18029984 gcaaatgttaacttatgccctcaagggcacatgttaaggaacttaataaagaaatatatgtacgaaaagtcgtgcattcaatttcttaaaagtcaaaata 18030083  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    ||||  |||| ||||  ||| || |||| |||||||| |||||||||||    
T  18030084 ttat-attttccaatgcaaagttactctttttaggttccttaacatgtg 18030131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 25134225 - 25134138
Alignment:
Q  271 cacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaag-ttaacatattatgttttttcaat 358  Q
    |||||| ||||||||| ||||| |||||||| |||||||||||||| || ||||||||| ||||| |||| ||||||||||||| ||||    
T  25134225 cacatgttaaggaactcattatagaaatatatgtatcaaaagtcgtgca-ttaacttctaaaaagtttaaaatattatgtttttccaat 25134138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 44418482 - 44418557
Alignment:
Q  278 taaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttt 353  Q
    ||||||||||||||  |||  ||||| || ||||||||| |||||||||||||||||||||| ||||||| |||||    
T  44418482 taaggaacttattaaagaagcatacgcataaaaagtcgtgcatttaacttcttaaaagttaatatattatattttt 44418557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 26040814 - 26040957
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatc-aaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||||||||||||   | || | |||| | |||||||||  |||| |||||||||||||| ||||||||| ||||||||||||   ||||||| |||    
T  26040814 caaatgttaatttgtgctctcaatgacacacgttaaggaactcgttatagaaatatacgtatcaaaaagtcgtgcatttaacttct---aagttaaaata 26040910  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgt 391  Q
    ||||||||||| |||  ||| ||||||  ||||||||  |||||||||    
T  26040911 ttatgtttttt-aatgcaaagttgctccttttaggttctttaacatgt 26040957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 19961158 - 19961237
Alignment:
Q  272 acatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||| ||||||||| ||||| |||||||||||||||||||| ||  ||| |||||| || ||||||| ||||||||||||    
T  19961158 acatgttaaggaactaattatagaaatatacgtatcaaaagttgtgtattcaacttc-tagaagttaaaatattatgtttt 19961237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 39430294 - 39430364
Alignment:
Q  282 gaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||| ||||| |||| ||| |||||||||||||| || | ||||||| ||||||||| ||||||||||||    
T  39430294 gaactcattatagaaacatatgtatcaaaagtcgtgcagtcaacttctaaaaagttaaaatattatgtttt 39430364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 386
Target Start/End: Complemental strand, 47499537 - 47499396
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    |||||||||||||||||   |||| | |||||| |||| || | |||||  |||||||||||| |||||| ||  ||| ||||| ||||||||| | |||    
T  47499537 gcaaatgttaatttgtgctattaaagacacatgttaagaaattcattataaaaatatacgtattaaaagttgtgaattcaactttttaaaagttcatata 47499438  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaa 386  Q
    |||| |||| | |||||||| ||| ||| |||| |||||||||    
T  47499437 ttatattttct-aatataaaattgttctttttatgttgcttaa 47499396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 25096303 - 25096368
Alignment:
Q  269 ggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaa 334  Q
    |||||||| ||||||||| ||||| |||||||||| || |||| || |||||| ||||||||||||    
T  25096303 ggcacatgttaaggaactcattatagaaatatacgcataaaaaatcatacattcaacttcttaaaa 25096368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 42891048 - 42891123
Alignment:
Q  278 taaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttttt 354  Q
    |||| |||| ||||| |||||||| ||||| ||| |||| | |||||||||| ||||||||| ||||||||||||||    
T  42891048 taagaaactcattatagaaatatatgtatcgaaaatcgtgcgtttaacttct-aaaagttaaaatattatgtttttt 42891123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 54787930 - 54787855
Alignment:
Q  278 taaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttt 353  Q
    ||||||| | |||||  |||||||| |||||||| ||||||||| ||| ||||||||||||| || |||| |||||    
T  54787930 taaggaattcattataaaaatatacatatcaaaaatcgtacattcaacatcttaaaagttaaaatgttatattttt 54787855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 353
Target Start/End: Complemental strand, 25102141 - 25102037
Alignment:
Q  248 atgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattat 347  Q
    ||||||| ||||| | | ||||||| ||| |||||| || ||||| |||||||| ||||||||| | ||  ||||||||||| ||||||||| |||| ||    
T  25102141 atgttaacttgtgccctcaagggcatatgttaagga-ctcattatagaaatatatgtatcaaaaattgtgtatttaacttctcaaaagttaaaatatcat 25102043  T
Q  348 gttttt 353  Q
     |||||    
T  25102042 attttt 25102037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 28193681 - 28193620
Alignment:
Q  278 taaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    |||| |||| ||||||||||| || |||||||||||||| |||| |||||||| ||| ||||    
T  28193681 taagcaactaattatggaaatgtatgtatcaaaagtcgtgcattcaacttcttcaaaattaa 28193620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 4539877 - 4539961
Alignment:
Q  269 ggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttt 353  Q
    |||||||| |||| |||| |||||  ||||||| |||| |||| |||| || | |||||||||||||||||  ||| ||||||||    
T  4539877 ggcacatgttaagaaactcattataaaaatatatgtattaaaaatcgtgcaatcaacttcttaaaagttaaattatcatgttttt 4539961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 41144745 - 41144651
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    |||||||||  ||||||| | ||||||||||| ||||||||| ||||| ||||||||| ||||||||||||| |||| ||||| |||||||||||    
T  41144745 caaatgttatcttgtgtcctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcgtgcattcaactttttaaaagttaa 41144651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 10523677 - 10523758
Alignment:
Q  270 gcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttt 351  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||||||| |||| || ||||||||||||||  ||||||||||    
T  10523677 gcacatgttaaggaactcattatagaaatatacgtatcaaaagtcgtgcattcaatttcttaaaagttaaactattatgttt 10523758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 43340302 - 43340383
Alignment:
Q  271 cacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||||| ||||||||||||||  |||||||| | || |||||| ||||||| ||||||||||||||||| ||||||||||||    
T  43340302 cacatgttaaggaacttattaaagaaatataagcataaaaagttgtacattcaacttcttaaaagttaatatattatgtttt 43340383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 26105032 - 26105113
Alignment:
Q  271 cacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||||| ||||||||||||||  |||||||||| || ||||||||| |||| || |||||||||||| | ||||||||||||    
T  26105032 cacatgttaaggaacttattaaagaaatatacgcataaaaagtcgtgcattcaaattcttaaaagttgatatattatgtttt 26105113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 401
Target Start/End: Original strand, 29557470 - 29557624
Alignment:
Q  246 aaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatatt 345  Q
    ||||||||||||||  | | ||| || |||| ||| ||| ||||||| |||||||| ||||||||||||||  | |||| || |||||||||||  |||     
T  29557470 aaatgttaatttgtaccctcaagcgcgcatgttaaagaatttattatagaaatatatgtatcaaaagtcgtgtagttaaatttttaaaagttaaattatc 29557569  T
Q  346 atgttttttcaatataaatttgctctctttaggttgcttaacatgtggtcttaggg 401  Q
    ||| |||| ||||| ||| ||||||  ||| |||| ||||||||||| ||||||||    
T  29557570 atg-ttttccaatacaaagttgctcattttgggttccttaacatgtgctcttaggg 29557624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 40845786 - 40845866
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaa 324  Q
    ||||||||||||||||| | |||||| || ||| ||||||||| |||||  ||||||| ||||||||| |||| |||||||    
T  40845786 gcaaatgttaatttgtgcccttaaggacatatgttaaggaactcattataaaaatatatgtatcaaaaatcgtgcatttaa 40845866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 14547819 - 14547914
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    ||||||||||| || || | | ||||||||||| ||||||| |  |||| |||||||||| |||||||||||| || |||| || |||||||||||    
T  14547819 gcaaatgttaacttatgccctcaagggcacatgttaaggaattccttatagaaatatacgcatcaaaagtcgtgcagttaatttattaaaagttaa 14547914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 392
Target Start/End: Original strand, 967581 - 967707
Alignment:
Q  266 aagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaac-ttcttaaaagttaacatattatgttttttcaatataaat 364  Q
    ||||||||||| ||||||| | ||||| |||||||| |||| |||||| || |||  ||| || ||||||||||| |||||||| ||||| |||| |||     
T  967581 aagggcacatgttaaggaattcattatagaaatatatgtattaaaagtggtgcatccaacttttttaaaagttaaaatattatgattttt-aatacaaaa 967679  T
Q  365 ttgctctctttaggttgcttaacatgtg 392  Q
    ||  ||| |||||||| ||||| |||||    
T  967680 ttattctttttaggtttcttaagatgtg 967707  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 392
Target Start/End: Original strand, 41063883 - 41063992
Alignment:
Q  282 gaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctctctttaggttg 381  Q
    ||||||||||  |||||||||| || ||||||||| |||| ||||| | |||| | || |||| || ||||| ||||  ||| ||||| | |||||||||    
T  41063883 gaacttattaaagaaatatacgcataaaaagtcgtgcattaaacttttaaaaaataaatatataatattttt-caatgcaaaattgctttttttaggttg 41063981  T
Q  382 cttaacatgtg 392  Q
    |||||||||||    
T  41063982 cttaacatgtg 41063992  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 554427 - 554358
Alignment:
Q  270 gcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaa 339  Q
    ||||||| ||||||||| ||||| |||||||| |||| ||||| ||| || | ||||| |||||||||||    
T  554427 gcacatgttaaggaactcattatagaaatatatgtattaaaagccgtgcagtcaactttttaaaagttaa 554358  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 12212350 - 12212241
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||||||||||||| ||| |||  |||| | |||  |||| ||||| ||||||||| ||| |||| ||||| | | ||||  |||||| |||| |||    
T  12212350 gcaaatgttaatttgtgccttcaagaacacacgttaacaaactcattatagaaatatacatattaaaattcgtatagtcaactctttaaaaattaaaata 12212251  T
Q  344 ttatgttttt 353  Q
    ||||||||||    
T  12212250 ttatgttttt 12212241  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 15190051 - 15190116
Alignment:
Q  289 ttatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttttt 354  Q
    |||| ||||||||||||| |||||| ||| |||||| |||| |||| | || ||||||||||||||    
T  15190051 ttatagaaatatacgtattaaaagttgtatatttaaattctcaaaaataaatatattatgtttttt 15190116  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 16627373 - 16627316
Alignment:
Q  295 aaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||||| |||| ||||||||| |||| ||||| ||||||||||| ||| ||||||||    
T  16627373 aaatatatgtattaaaagtcgtgcattcaactttttaaaagttaaaatactatgtttt 16627316  T

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Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 245 - 353
Target Start/End: Original strand, 30249141 - 30249249
Alignment:
Q  245 caaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    |||||| ||| ||||| | |||| | |||||| ||||||||| ||||| |||||||| ||||||||| |||| || | ||||||||||||||||| ||||    
T  30249141 caaatgctaacttgtgcccttaatgacacatgttaaggaactcattatagaaatataggtatcaaaattcgtgcagtcaacttcttaaaagttaaaatat 30249240  T
Q  345 tatgttttt 353  Q
    |||||||||    
T  30249241 tatgttttt 30249249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 3787424 - 3787532
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||||||||| | | |||| |||||| ||| |||||||||||  |||||||||||| ||||||| |||||| || ||||||||||||||  ||    
T  3787424 gcaaatgctaatttgtgccctcaaggacacatgttaaagaacttattataaaaatatacgtattaaaagtcatacattcaatttcttaaaagttaaacta 3787523  T
Q  344 ttatgtttt 352  Q
    | |||||||    
T  3787524 tcatgtttt 3787532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 30438510 - 30438430
Alignment:
Q  266 aagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatatta 346  Q
    ||||||||||| || ||||||  ||||  ||||||||||||||| ||||||||||| ||||||||||||||| | ||||||    
T  30438510 aagggcacatgttacggaactctttataaaaatatacgtatcaatagtcgtacattcaacttcttaaaagtttaaatatta 30438430  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 2614427 - 2614366
Alignment:
Q  283 aacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatat 344  Q
    ||||||||||  |||||||||||||||||||||| |||| ||||||| ||||||||| ||||    
T  2614427 aacttattataaaaatatacgtatcaaaagtcgtgcattcaacttctaaaaagttaaaatat 2614366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 5849966 - 5850023
Alignment:
Q  295 aaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||| ||||||||||||| ||||||| |||||||||||| |||||| ||||||||||    
T  5849966 aaatagacgtatcaaaagtagtacattcaacttcttaaaaattaacaaattatgtttt 5850023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 29285990 - 29286074
Alignment:
Q  269 ggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttt 353  Q
    |||| ||| ||| ||||| ||||| ||||||||||||| |||| |||| |||| |||||||||||| |||| ||||||| |||||    
T  29285990 ggcaaatgttaatgaactcattatagaaatatacgtataaaaaatcgtgcattcaacttcttaaaatttaaaatattatattttt 29286074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 1065635 - 1065692
Alignment:
Q  295 aaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||||| ||||||||||||||||||| ||||| |||||||||||  |||||| ||||    
T  1065635 aaatatatgtatcaaaagtcgtacattcaacttattaaaagttaaactattatatttt 1065692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 14215232 - 14215160
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgt 316  Q
    ||||||||||| ||||||||| ||||||||||  ||| |||||||||||   |||||| ||||||||| ||||    
T  14215232 gcaaatgttaacttgtgtcttgaagggcacatcttaatgaacttattataagaatatatgtatcaaaaatcgt 14215160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 2831380 - 2831462
Alignment:
Q  270 gcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||||| ||| ||| ||||||| |||||||| | |||| | ||||| |||| |||||||||||| |||| || |||||||||    
T  2831380 gcacatgttaaagaatttattatagaaatatatgcatcacaggtcgtgcattcaacttcttaaaaattaaaatgttatgtttt 2831462  T

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Target: scaffold0542 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 392
Target Start/End: Original strand, 4511 - 4657
Alignment:
Q  244 gcaaatgttaatttgtgtctttaagggcacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacata 343  Q
    ||||||| ||| ||||| | | |||| |||||| ||||  ||| ||||| ||||||||| ||||||||  ||| |||| |||||||||||| ||  ||||    
T  4511 gcaaatgctaacttgtgccctcaaggacacatgttaagatactcattatagaaatatacatatcaaaatgcgtgcattcaacttcttaaaaattgtcata 4610  T
Q  344 ttatgttttttcaatataaatttgctctctttaggttgcttaacatgtg 392  Q
    |||  |||||||||| | || ||||||| |||||||||||||| |||||    
T  4611 tta--ttttttcaatgtgaaattgctctttttaggttgcttaatatgtg 4657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 3100 - 3019
Alignment:
Q  271 cacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||||| ||||||||| ||||| || ||||| |||||||||||| | |||| ||||||||||||||||| || |||||||||    
T  3100 cacatgttaaggaactcattatagatatatatgtatcaaaagtcatgcattcaacttcttaaaagttaaaatgttatgtttt 3019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 6141 - 6060
Alignment:
Q  271 cacatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||||| ||||||||| ||||| || ||||| |||||||||||| |  ||| |||||||||||| |||| || |||||||||    
T  6141 cacatgttaaggaactcattatagatatatatgtatcaaaagtcatggattcaacttcttaaaaattaaaatgttatgtttt 6060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 286 - 390
Target Start/End: Complemental strand, 10868 - 10765
Alignment:
Q  286 ttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgttttttcaatataaatttgctctctttaggttgctta 385  Q
    ||||||| |||||||| ||||||||||||||  ||||||||| |||||| ||||||||| || |||||| |||||||| ||| |||  ||  ||||||||    
T  10868 ttattatagaaatatatgtatcaaaagtcgtgtatttaactttttaaaaattaacatatcatatttttt-aatataaaattgttcttcttgagttgctta 10770  T
Q  386 acatg 390  Q
    |||||    
T  10769 acatg 10765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 635 - 566
Alignment:
Q  283 aacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    |||| ||||| |||||||| |||||||||||||| |||| |||||||||||  |||| || |||||||||    
T  635 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaatgttatgtttt 566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 13150 - 13101
Alignment:
Q  303 gtatcaaaagtcgtacatttaacttcttaaaagttaacatattatgtttt 352  Q
    ||||||||||| ||||||| |||||||||||| |||||| ||||||||||    
T  13150 gtatcaaaagtagtacattcaacttcttaaaaattaacaaattatgtttt 13101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 12431 - 12493
Alignment:
Q  272 acatgctaaggaacttattatggaaatatacgtatcaaaagtcgtacatttaacttcttaaaa 334  Q
    ||||| ||| ||||| |||||  ||||||||||||||||||| || |||| ||||||||||||    
T  12431 acatgttaaagaactaattataaaaatatacgtatcaaaagttgtgcattcaacttcttaaaa 12493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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