View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_high_82 (Length: 251)
Name: NF1379_high_82
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_82 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0061 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 61 - 251
Target Start/End: Complemental strand, 27274122 - 27273932
Alignment:
| Q |
61 |
ctaatgaatgaagccatgatactagaagaaaaaagacggggagggtctcataaaatacaaaatttgcatacgcattcttaatttctttgataactcaatg |
160 |
Q |
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| T |
27274122 |
ctaatgaatgaagccatcatactagaagaaaaaagacggggagggtctcataaaatacaaaatttgcatacgcactcttaatttctttgataactcaatg |
27274023 |
T |
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| Q |
161 |
gattttggtctttaaatgaaccttcatccttccatgaccgcatcaggccacaattgtgtgtaaacccacattacgacgctgcaacgatttt |
251 |
Q |
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| T |
27274022 |
gattttggtctttaaatgaaccttcatccttccatgaccgcatcaggccacaattgtgtgtaaacccacattacgatgctgcaacgatttt |
27273932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 27274278 - 27274239
Alignment:
| Q |
29 |
acaatttagccgggtcaaggaaatgtgctatgctaatgaa |
68 |
Q |
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| T |
27274278 |
acaatttagccgggtcaaggaaatgtgctatgcttatgaa |
27274239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 1028 - 840
Alignment:
| Q |
61 |
ctaatgaatgaagccatgatactagaagaaaaaagacggggagggtctcataaaatacaaaatttgcatacgcattcttaatttctttgataactcaatg |
160 |
Q |
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| T |
1028 |
ctaatgaatgaagccatcatactggaagaaaaaataccggtagggtctcataaaatacaaaatttgcatacgcattcttaatttcgttaataactcaatg |
929 |
T |
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| Q |
161 |
gattttggtctttaaatgaaccttcatccttccatgaccgcatcaggccacaattgtgtgtaaacccacattacgacgctgcaacgatt |
249 |
Q |
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| T |
928 |
gactttggtctttaaatgaaccttcatccttccatgaacgcatcaggccacaattgtgtgtaaacccacattacgacgctgcaacgatt |
840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 6539 - 6351
Alignment:
| Q |
61 |
ctaatgaatgaagccatgatactagaagaaaaaagacggggagggtctcataaaatacaaaatttgcatacgcattcttaatttctttgataactcaatg |
160 |
Q |
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||||||||||||||||| ||||| |||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
6539 |
ctaatgaatgaagccatcatactggaagaaaaaataccggtagggtctcataaaatacaaaatttgcatacgcattcttaatttcgttaataactcaatg |
6440 |
T |
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| Q |
161 |
gattttggtctttaaatgaaccttcatccttccatgaccgcatcaggccacaattgtgtgtaaacccacattacgacgctgcaacgatt |
249 |
Q |
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| T |
6439 |
gactttggtctttaaatgaaccttcatccttccatgaacgcatcaggccacaattgtgtgtaaacccacattacgacgctgcaacgatt |
6351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 1184 - 1145
Alignment:
| Q |
29 |
acaatttagccgggtcaaggaaatgtgctatgctaatgaa |
68 |
Q |
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| T |
1184 |
acaatttagccgggtcaaggaaatgtgctatgcttatgaa |
1145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 6695 - 6656
Alignment:
| Q |
29 |
acaatttagccgggtcaaggaaatgtgctatgctaatgaa |
68 |
Q |
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| T |
6695 |
acaatttagccgggtcaaggaaatgtgctatgcttatgaa |
6656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 13551378 - 13551199
Alignment:
| Q |
61 |
ctaatgaatgaagccatgatactagaagaaaaaagacggggagggtctcataaaatacaaaatttgcatacgcattcttaatttctttgataactcaatg |
160 |
Q |
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||||||||||||||||| | ||| |||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13551378 |
ctaatgaatgaagccatcacactggaagaaaaaagatggg-agggtctcatacagtacaaaatttgcatacgcattcttaatttctttgataactcaatg |
13551280 |
T |
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| Q |
161 |
gattttggtctttaaatgaaccttcatccttccatgaccgcatcaggccacaattgtgtgtaaacccacattacgacgctgcaacgatt |
249 |
Q |
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| T |
13551279 |
gattttggtctttaaatgaaccttcatccttc--------catcaggccacaattgtgtgtaaaaccatattaagacgctgcaacgatt |
13551199 |
T |
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