View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_high_86 (Length: 250)
Name: NF1379_high_86
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_high_86 |
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| [»] scaffold0693 (1 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 7265 - 7059
Alignment:
| Q |
23 |
atcatcaagcggaaatgtgtggacaaaactttgaagaataagtatgattatatgaagaaggattggcgattgtggaaatttttgaagtttggagaaactg |
122 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7265 |
atcattaagcggaaatgtgtggacaaaactttgaagaataagtatgattatatgaagaaggattggcgattgtggaaatttttgaagtttggagaaactg |
7166 |
T |
|
| Q |
123 |
gcttaggatgggatcctcttacaggaaagcttagttgttcagatgagtggtgggatagaaagattaaggttagtttctttcatatgttcatacaattaag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7165 |
gcttaggatgggatcctcttacaggaaagcttagttgttcagatgagtggtgggatagaaagattaaggttagtttctttcatatgttcatacaattaag |
7066 |
T |
|
| Q |
223 |
ttagaat |
229 |
Q |
| |
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||||||| |
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| T |
7065 |
ttagaat |
7059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 53438199 - 53438405
Alignment:
| Q |
23 |
atcatcaagcggaaatgtgtggacaaaactttgaagaataagtatgattatatgaagaaggattggcgattgtggaaatttttgaagtttggagaaactg |
122 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53438199 |
atcattaagcggaaatgtgtggacaaaactttgaagaataagtatgattatatgaagaaggattggcgattgtggaaatttttgaagtttggagaaactg |
53438298 |
T |
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| Q |
123 |
gcttaggatgggatcctcttacaggaaagcttagttgttcagatgagtggtgggatagaaagattaaggttagtttctttcatatgttcatacaattaag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53438299 |
gcttaggatgggatcctcttacaggaaagcttagttgttcagatgagtggtgggatagaaagattaaggttagtttctttcatatgttcatacaattaag |
53438398 |
T |
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| Q |
223 |
ttagaat |
229 |
Q |
| |
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||||||| |
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| T |
53438399 |
ttagaat |
53438405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 53439632 - 53439838
Alignment:
| Q |
23 |
atcatcaagcggaaatgtgtggacaaaactttgaagaataagtatgattatatgaagaaggattggcgattgtggaaatttttgaagtttggagaaactg |
122 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53439632 |
atcattaagcggaaatgtgtggacaaaactttgaagaataagtatgattatatgaagaaggattggcgattgtggaaatttttgaagtttggagaaactg |
53439731 |
T |
|
| Q |
123 |
gcttaggatgggatcctcttacaggaaagcttagttgttcagatgagtggtgggatagaaagattaaggttagtttctttcatatgttcatacaattaag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53439732 |
gcttaggatgggatcctcttacaggaaagcttagttgttcagatgagtggtgggatagaaagattaaggttagtttctttcatatgttcatacaattaag |
53439831 |
T |
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| Q |
223 |
ttagaat |
229 |
Q |
| |
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||||||| |
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| T |
53439832 |
ttagaat |
53439838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 5464590 - 5464439
Alignment:
| Q |
47 |
aaaactttgaagaataagtatgattatatgaagaaggattggcgattgtggaaatttttgaagtttggagaaactggcttaggatgggatcctcttacag |
146 |
Q |
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|||||||| |||||||||| |||| | |||| ||| ||||||||| | ||||| ||| |||||| ||| ||||||| ||||||||||||||| |||||| |
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| T |
5464590 |
aaaactttaaagaataagtttgataaaatgaggaaagattggcgactttggaagtttctgaagtatggttaaactggattaggatgggatcctgttacag |
5464491 |
T |
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| Q |
147 |
gaaagcttagttgttcagatgagtggtgggatagaaagattaaggttagttt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5464490 |
gaaagcttagttgttcagatgagtggtgggatagaaaaattaaggttagttt |
5464439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 42998540 - 42998746
Alignment:
| Q |
23 |
atcatcaagcggaaatgtgtggacaaaactttgaagaataagtatgattatatgaagaaggattggcgattgtggaaatttttgaagtttggagaaactg |
122 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42998540 |
atcattaagcggaaatgtgtggacaaaactttgaaaaataagtatgattatatgaagaaggattggcgattgtggaaatttttgaagtttggagaaactg |
42998639 |
T |
|
| Q |
123 |
gcttaggatgggatcctcttacaggaaagcttagttgttcagatgagtggtgggatagaaagattaaggttagtttctttcatatgttcatacaattaag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42998640 |
gcttaggatgggatcctcttacaggaaagcttagttgttcagatgagtggtgggatagaaagattaaggttagtttctttcatatgttcatacaattaag |
42998739 |
T |
|
| Q |
223 |
ttagaat |
229 |
Q |
| |
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||||||| |
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|
| T |
42998740 |
ttagaat |
42998746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 29375315 - 29375466
Alignment:
| Q |
47 |
aaaactttgaagaataagtatgattatatgaagaaggattggcgattgtggaaatttttgaagtttggagaaactggcttaggatgggatcctcttacag |
146 |
Q |
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|||||||| |||||||||| |||| | |||| ||| ||||||||| | ||||| ||| |||||| ||| |||||||| ||||||||||||||| |||||| |
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| T |
29375315 |
aaaactttaaagaataagtttgataaaatgaggaaagattggcgaatttggaagtttctgaagtatggtgaaactggattaggatgggatcctgttacag |
29375414 |
T |
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| Q |
147 |
gaaagcttagttgttcagatgagtggtgggatagaaagattaaggttagttt |
198 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
29375415 |
gaaagcttagttgttcaaatgagtggtgggatagaaaaattaaggttagttt |
29375466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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