View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_10 (Length: 569)
Name: NF1379_low_10
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 253 - 541
Target Start/End: Original strand, 32588796 - 32589084
Alignment:
| Q |
253 |
cattaatgtgatagtttgattcctgaagtataatttatccacctctcccttccactgtgcctttgttattatttcttccattctcaacatgtcacgtatt |
352 |
Q |
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| T |
32588796 |
cattaatgtgatagtttgattcctgaagtataatttatccacctctcccttccactgcgcctttgttattatttcttccattctcaacatgtcacgtatt |
32588895 |
T |
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| Q |
353 |
ccttggaatggaacaaaggtatatttatttcctttactatgcatatgaaaattcattaca-tttgttttttcaaaatgacaagagcacaagtgttaaaga |
451 |
Q |
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| T |
32588896 |
ccttggaatggaacaaaggtatatttatttcctttactatgcatatggaaattcattacatttttttttttcaaaatgacaagagcacaagtgttaaaga |
32588995 |
T |
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| Q |
452 |
ttttgatttacccttgtgnnnnnnngttggatcgacgaatcaagtaaaccttactttgtaaagattttacatcatgtttatgctcttaat |
541 |
Q |
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| T |
32588996 |
ttttgatttacccttgtgaaaaaaagttggattgacgaatcaagtaaaccttac-ttgtaaagattttacatcatgtttatgctcttaat |
32589084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 32588554 - 32588701
Alignment:
| Q |
11 |
agaatataataaaagtgtcaatacaaagataacgaaaggtaggttcaataaaatggaacaattagtcaccccatcttgtcccaaccaagtcgtcttacat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32588554 |
agaaaataataaaagtgtcaatacaaagataacgaaaggtaggttcaataaaatggaacaattagtcaccccatcttgtcccaaccaagtcgtcttacat |
32588653 |
T |
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| Q |
111 |
atgctactatatccgttttaaaattccctcacaaacacgcataaacat |
158 |
Q |
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| T |
32588654 |
atgctactatatccgttttaaaattccctcacaaacacgcataaacat |
32588701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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