View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_101 (Length: 250)
Name: NF1379_low_101
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_101 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 668677 - 668915
Alignment:
| Q |
1 |
atatgggtgcgtgcgtacgtatcatcaccattcaagtcttgtaaaaatattt-ta-ttttaaaatatggtgatactagtttcctacatttgttaaagcag |
98 |
Q |
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| T |
668677 |
atatgggtgcgtgcgtacgtatcgtcaccattcaagtcttgtaaaaatatttctagttttaaantatggtgatactagtttcctgcagttgttaaag--- |
668773 |
T |
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| Q |
99 |
aaagaaaacaaaattattttaatttacgttaatttattgattgattaatgagagtagctgtatattataatagaagtagaacatattgctatcannnnnn |
198 |
Q |
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| T |
668774 |
aaagaaaacaaaattattataatttacgtcaatttattgattgattaatgagagtagctgtatattataatagaagtagaacaaattgctatcatttttt |
668873 |
T |
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| Q |
199 |
nnnngaaggaagagcagatttctttaatttattttccccttt |
240 |
Q |
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| T |
668874 |
tttttaaggaagagcagatttctttaatttattttccccttt |
668915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 673203 - 673358
Alignment:
| Q |
7 |
gtgcgtgcgtacgtatcatcaccattcaagtcttgt---aaaaatatttt-attttaaaatatggtgatactagtttcctacatttgttaaagcagaaag |
102 |
Q |
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| T |
673203 |
gtgcgtgcgtgtgtatcattaccgttcaagtcttcttataaaaatatttttattttaaattatggtgatactagtgtcctatatttgttaa---agaaag |
673299 |
T |
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| Q |
103 |
aaaacaaaattattttaatttacgttaatttattgattgattaatgagagtagctgtatat |
163 |
Q |
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| T |
673300 |
aaaacaaaattgttttaatttacgttaa--tattaattgattaatgagagtagctgtatat |
673358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 671188 - 671324
Alignment:
| Q |
37 |
tcttgtaaaaatatttt-attttaaaatatggtgatactagtttcctacatttgttaaagcagaaagaaaacaaaattatttta--atttacgttaattt |
133 |
Q |
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| T |
671188 |
tcttataaaaatatttttattttaaattacggtgatactagtgtcttacatttgataaag---aaaaaaaacaaatttgttttataatttatgtttattt |
671284 |
T |
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| Q |
134 |
attgattgattaatgagagtagctgtatattataatagaa |
173 |
Q |
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| T |
671285 |
attaattgattaatgagagtagatgtaaattgtaatagaa |
671324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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