View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1379_low_103 (Length: 246)

Name: NF1379_low_103
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1379_low_103
NF1379_low_103
[»] chr3 (13 HSPs)
chr3 (52-151)||(8590585-8590684)
chr3 (56-151)||(6479056-6479151)
chr3 (52-151)||(6553512-6553611)
chr3 (52-151)||(8455510-8455609)
chr3 (52-151)||(6519236-6519335)
chr3 (52-151)||(6736846-6736945)
chr3 (52-122)||(6948125-6948195)
chr3 (52-118)||(8479979-8480045)
chr3 (55-139)||(5281510-5281594)
chr3 (55-147)||(5299587-5299679)
chr3 (91-147)||(4388024-4388080)
chr3 (91-147)||(5251061-5251117)
chr3 (91-147)||(5268948-5269004)
[»] scaffold0425 (1 HSPs)
scaffold0425 (52-151)||(6551-6650)
[»] chr4 (1 HSPs)
chr4 (70-151)||(41068403-41068482)
[»] chr5 (1 HSPs)
chr5 (52-99)||(19936185-19936232)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 8590585 - 8590684
Alignment:
Q  52 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  8590585 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgcttcggtactgctttatctctgct 8590684  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 6479151 - 6479056
Alignment:
Q  56 atctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  6479151 atctcatctaatagttggtctgcttcataaacaacatgtttaagtttatcaagccacttcttcacatatatgatttggtactgctttatctctgct 6479056  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 6553611 - 6553512
Alignment:
Q  52 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct 151  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  6553611 agaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 6553512  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 8455510 - 8455609
Alignment:
Q  52 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  8455510 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 8455609  T

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Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 6519335 - 6519236
Alignment:
Q  52 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| | |||||||    
T  6519335 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttcagctctgct 6519236  T

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Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 6736846 - 6736945
Alignment:
Q  52 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct 151  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  6736846 agaaatctcatccaatagttggtctgcttcataaagaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 6736945  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 6948125 - 6948195
Alignment:
Q  52 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacat 122  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  6948125 agaaatctcatctaacagttggtctgcctcatagacaacatgtttaagttcatcaagccacttcttcacat 6948195  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 8480045 - 8479979
Alignment:
Q  52 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttc 118  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||    
T  8480045 agaaatctcatgtaatagttggtttgcttcataaacaacatgtttaagttcatcaagtcaattcttc 8479979  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 5281510 - 5281594
Alignment:
Q  55 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgc 139  Q
    ||||||||| || | ||||||||| ||||| ||| |||||||||| ||||||||||||||||| |||||| |||||| |||||||    
T  5281510 aatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttctttacatatgtgcttttgtactgc 5281594  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 5299587 - 5299679
Alignment:
Q  55 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctc 147  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| |||  ||||| ||| |||||| ||||    
T  5299587 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctc 5299679  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 4388080 - 4388024
Alignment:
Q  91 atgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctc 147  Q
    ||||||||| ||||||||||||||||||||  | ||||||| ||||||||| |||||    
T  4388080 atgtttaagatcatcaagccacttcttcacggacatgctttggtactgcttcatctc 4388024  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 5251061 - 5251117
Alignment:
Q  91 atgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctc 147  Q
    ||||||||| |||||||||||||||||||| || ||||||| ||| ||||| |||||    
T  5251061 atgtttaagatcatcaagccacttcttcacgtacatgctttggtattgcttcatctc 5251117  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 5268948 - 5269004
Alignment:
Q  91 atgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctc 147  Q
    ||||||||| |||||||||||||||||||| || ||||||| | ||||||| |||||    
T  5268948 atgtttaagatcatcaagccacttcttcacgtacatgctttggaactgcttcatctc 5269004  T

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Target: scaffold0425 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 6650 - 6551
Alignment:
Q  52 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct 151  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  6650 agaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 6551  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 41068482 - 41068403
Alignment:
Q  70 ttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatatgctttcgtactgctttatctctgct 151  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | || |||||||    
T  41068482 ttggtctgcttca--aacaacatgtttaagttcatcaagccaattcttcacatatatgctttggtactgttatagctctgct 41068403  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 19936185 - 19936232
Alignment:
Q  52 agaaatctcatctaatagttggtctgcttcataaacaacatgtttaag 99  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  19936185 agaaatctcatgtaatagttggtttgcttcataaacaacatgtttaag 19936232  T

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