View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_109 (Length: 233)
Name: NF1379_low_109
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_109 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 44152779 - 44153011
Alignment:
| Q |
1 |
tgtgcaaataaagacagaaagggaaacataccagaggatcttttaaatagttatgacataaccaattggccaaatatattagaagttcacggcccacagg |
100 |
Q |
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| T |
44152779 |
tgtgcaaataaagacagaaagggaaacataccagaggatcttttaaatagttatgacataaccaattggccaaatatattagaagttcacggcccacagg |
44152878 |
T |
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| Q |
101 |
ttcatctccatgcacatttccaatatactgcatcagtattatgtcggttacagaatttcgtaatacagaactaccaaaagtatgaaaaattcatttcact |
200 |
Q |
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| T |
44152879 |
ttcatctccatgcacatttccaatatactgcatcagtattatgtcggttacagaatttcgtaatacagaactaccaaaagtatgaaaaattcattttact |
44152978 |
T |
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| Q |
201 |
gatgttaggtgccaagaactcaccttaaatgca |
233 |
Q |
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| T |
44152979 |
gatgttaggtgccaagaactcaccttaaatgca |
44153011 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 33937569 - 33937614
Alignment:
| Q |
42 |
tttaaatagttatgacataaccaattggccaaatatattagaagtt |
87 |
Q |
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| T |
33937569 |
tttaaatggttatcacataaccaattggccaaatatatcagaagtt |
33937614 |
T |
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