View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_11 (Length: 567)
Name: NF1379_low_11
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 30 - 456
Target Start/End: Complemental strand, 53033403 - 53032977
Alignment:
| Q |
30 |
gaaacaacgatgatagttaaacaccttaacttcttaattaattacaattattattatagaggtaaaggagaataaattgaattgaatgaggtgataatga |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53033403 |
gaaacaacgatgatagttaaacaccttaacttcttaattaattacaattattattatagaggtaaaggagaataaattgaattgaatgaggtgataatga |
53033304 |
T |
|
| Q |
130 |
tgtgtgcatatataaaagttggacaaacctggtaaggcaataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagctc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53033303 |
tgtgtgcatatataaaagttggacaaacctggtaaggcaataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagctc |
53033204 |
T |
|
| Q |
230 |
ttacttctcccactgtttctccagttatctaaattaaccaactaatcatacttaattaattaattcaactaaaaatacacatttaatcgttgtagtagta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53033203 |
ttacttctcccactgtttctccagttatctaaattaaccaactaatcatacttaattaattaattcaactaaaaatacacatttaatcgttgtagtagta |
53033104 |
T |
|
| Q |
330 |
ttgtaaaatccaaatatatatactagtggtagtgattaaagtacgtacctctcttagcataagtgtctttggaatgactctacataagaaaggaggaaga |
429 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
53033103 |
ttgtataatccaaatatatatactagtggtagtgattaaagtacgtacctctcttagcataagtgtctttggaatgactctacataagaaagtaggaaga |
53033004 |
T |
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| Q |
430 |
atcatgaacacaaaatctatacatata |
456 |
Q |
| |
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||||||| |||||||| |||||||||| |
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| T |
53033003 |
atcatgagcacaaaatgtatacatata |
53032977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 447 - 559
Target Start/End: Complemental strand, 53032960 - 53032848
Alignment:
| Q |
447 |
tatacatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
546 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53032960 |
tatatatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
53032861 |
T |
|
| Q |
547 |
tcaatcctatgct |
559 |
Q |
| |
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||||||||||||| |
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| T |
53032860 |
tcaatcctatgct |
53032848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 7884850 - 7884778
Alignment:
| Q |
155 |
aacctggtaaggcaataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagc |
227 |
Q |
| |
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||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7884850 |
aacctggcaaggcaataaaagcatcggcctgtcgagccatttcggccttgcgttggtgcatgtccgatacagc |
7884778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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