View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1379_low_110 (Length: 230)
Name: NF1379_low_110
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_110 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 49656994 - 49657112
Alignment:
| Q |
1 |
ttaatattagtggtgccacctaccaatcaccctcttgcttctcttttgctgaattatcaccacaaatctgtgatcctaattaattcgcattatactacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49656994 |
ttaatattagtggtgccacctaccaatcaccctcttgcttctcttttgctgaattatcaccacaaatctgtgatcctaattaattcgcattatactacca |
49657093 |
T |
|
| Q |
101 |
tcattcagaccttcactct |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
49657094 |
tcattcagaccttcactct |
49657112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University