View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1379_low_111 (Length: 228)

Name: NF1379_low_111
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1379_low_111
NF1379_low_111
[»] chr7 (5 HSPs)
chr7 (1-222)||(5290167-5290388)
chr7 (1-222)||(5301927-5302148)
chr7 (2-222)||(5309575-5309785)
chr7 (12-222)||(5283753-5283960)
chr7 (19-222)||(5314404-5314602)
[»] chr1 (3 HSPs)
chr1 (100-222)||(44128143-44128265)
chr1 (100-222)||(44132348-44132470)
chr1 (100-222)||(44140770-44140892)
[»] chr5 (6 HSPs)
chr5 (106-222)||(1481681-1481797)
chr5 (106-222)||(1491571-1491687)
chr5 (122-222)||(1504351-1504451)
chr5 (114-222)||(1477578-1477686)
chr5 (134-222)||(1496809-1496897)
chr5 (155-222)||(1485466-1485533)
[»] chr2 (1 HSPs)
chr2 (131-222)||(24165522-24165613)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5290388 - 5290167
Alignment:
Q  1 ccaaacatttctgcaccacaacacacttcaacccttttcttttctacaacaagcactaaacctcattgtcttcaaatttcagtactacattttattttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5290388 ccaaacatttctgcaccacaacacacttcaacccttttcttttctacaacaagcactaaacctcattgtcttcaaatttcagtactacattttattttta 5290289  T
Q  101 tttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5290288 tttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatc 5290189  T
Q  201 cggcaaattgtgttgaacaaag 222  Q
    | ||||||||||||||||||||    
T  5290188 cagcaaattgtgttgaacaaag 5290167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5301927 - 5302148
Alignment:
Q  1 ccaaacatttctgcaccacaacacacttcaacccttttcttttctacaacaagcactaaacctcattgtcttcaaatttcagtactacattttattttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5301927 ccaaacatttctgcaccacaacacacttcaacccttttcttttctacaacaagcactaaacctcattgtcttcaaatttcagtactacattttattttta 5302026  T
Q  101 tttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5302027 tttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatc 5302126  T
Q  201 cggcaaattgtgttgaacaaag 222  Q
    | ||||||||||||||||||||    
T  5302127 cagcaaattgtgttgaacaaag 5302148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 5309575 - 5309785
Alignment:
Q  2 caaacatttctgcaccacaacacacttcaacccttttcttttctacaacaagcactaaacctcattgtcttcaaatttcagtactacattttatttttat 101  Q
    ||||||| | ||||||||||||| |||||||||||| |||| |||||||||| |||||| |||||| | ||||||||| ||||||          | |||    
T  5309575 caaacatatttgcaccacaacactcttcaaccctttcctttactacaacaagtactaaaactcattttgttcaaattttagtact----------tatat 5309664  T
Q  102 ttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatcc 201  Q
    |||  || |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||||||    
T  5309665 ttgcaactaaagatatcaaaatggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaactattttggccattggtactgcaaatcc 5309764  T
Q  202 ggcaaattgtgttgaacaaag 222  Q
     ||||||||||||||||||||    
T  5309765 agcaaattgtgttgaacaaag 5309785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 5283753 - 5283960
Alignment:
Q  12 tgcaccacaacacacttcaacccttttcttttctacaaca--agcact-aaacctcattgtcttcaaatttcagtactacattttatttttatttgatac 108  Q
    ||||||||||||| |||||||||||| |||| ||||||||  || ||| ||| |||||||| |||||||||||||||| |||||| |           ||    
T  5283753 tgcaccacaacactcttcaaccctttcctttactacaacacaagtactgaaaactcattgtgttcaaatttcagtacttcattttct-----------ac 5283841  T
Q  109 caaagatatc-----aaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccgg 203  Q
    |||||||||      || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |    
T  5283842 caaagatatatcaagaatatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggccctgcaaccatcttggccattgggactgcaaatccag 5283941  T
Q  204 caaattgtgttgaacaaag 222  Q
    |||||||||||||||||||    
T  5283942 caaattgtgttgaacaaag 5283960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 5314404 - 5314602
Alignment:
Q  19 caacacacttcaacccttttcttttctacaacaagcact-aaacctcattgtcttcaaatttcagtactacattttatttttatttgataccaaagatat 117  Q
    |||||||||| ||||| || ||||||||||||||| ||| ||| |||||||| |||||||||||||||| ||||||||           |||||||||||    
T  5314404 caacacactttaacccattccttttctacaacaagtactgaaaactcattgtgttcaaatttcagtacttcattttat-----------accaaagatat 5314492  T
Q  118 c-----aaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtg 212  Q
          || |||||||||||||||||||||||||| |||||||| ||||||||||||||||| || || |||||||| ||||||||||| ||||||||||    
T  5314493 atcaagaatatggtgagtgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtg 5314592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 44128143 - 44128265
Alignment:
Q  100 atttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaat 199  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||||||||||||     
T  44128143 atttgctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaac 44128242  T
Q  200 ccggcaaattgtgttgaacaaag 222  Q
    || || |||||||||||||||||    
T  44128243 ccagccaattgtgttgaacaaag 44128265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 44132348 - 44132470
Alignment:
Q  100 atttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaat 199  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||||||||||||     
T  44132348 atttgctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaac 44132447  T
Q  200 ccggcaaattgtgttgaacaaag 222  Q
    || || |||||||||||||||||    
T  44132448 ccagccaattgtgttgaacaaag 44132470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 44140770 - 44140892
Alignment:
Q  100 atttgataccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaat 199  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||||||||||||     
T  44140770 atttgctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaac 44140869  T
Q  200 ccggcaaattgtgttgaacaaag 222  Q
    || || |||||||||||||||||    
T  44140870 ccagccaattgtgttgaacaaag 44140892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 1481681 - 1481797
Alignment:
Q  106 taccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggca 205  Q
    ||||||| ||| ||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||| || || |||||||||||||||||||| |||    
T  1481681 taccaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagca 1481780  T
Q  206 aattgtgttgaacaaag 222  Q
    || ||||||||||||||    
T  1481781 aactgtgttgaacaaag 1481797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 1491571 - 1491687
Alignment:
Q  106 taccaaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggca 205  Q
    ||||||| ||| ||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||| || || |||||||||||||||||||| |||    
T  1491571 taccaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagca 1491670  T
Q  206 aattgtgttgaacaaag 222  Q
    || ||||||||||||||    
T  1491671 aactgtgttgaacaaag 1491687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 1504351 - 1504451
Alignment:
Q  122 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaa 221  Q
    ||||||||||| ||||||||||| || ||||| || ||||||||||||||||| || || ||||||||||||||||||||  ||||||||||||||||||    
T  1504351 atggtgagtgtatctgaaattcgcaaggctcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccaccaaattgtgttgaacaaa 1504450  T
Q  222 g 222  Q
    |    
T  1504451 g 1504451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 1477578 - 1477686
Alignment:
Q  114 atatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgt 213  Q
    ||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| ||||| || ||| | |||||||||||||||||||| || || |||||    
T  1477578 atatcaagatggtgagtgtatctgaaattcgcaaggctcagagggcagaaggccctgccaccatcatggccattggcactgcaaatccagccaactgtgt 1477677  T
Q  214 tgaacaaag 222  Q
    |||||||||    
T  1477678 tgaacaaag 1477686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 1496809 - 1496897
Alignment:
Q  134 tctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaag 222  Q
    ||||||||||| |  ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||  |||||||| ||||||||||    
T  1496809 tctgaaattcgaagggctcaaagggcagaaggccctacaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaag 1496897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 1485466 - 1485533
Alignment:
Q  155 agggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaag 222  Q
    ||||||||||| |||||||  ||||| ||||| || |||||||||||  |||||||||||||||||||    
T  1485466 agggcagaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaag 1485533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 24165613 - 24165522
Alignment:
Q  131 gtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccggcaaattgtgttgaacaaag 222  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||| ||||||||||||||    
T  24165613 gtgtctgaaattcgtaaggctcaaagggcagaaggccctgcaactatcttggccattggcactgcaaatccaccaaactgtgttgaacaaag 24165522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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