View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_112 (Length: 210)
Name: NF1379_low_112
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_112 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 668349 - 668559
Alignment:
| Q |
1 |
acacgtacaagccttcttcaaccaacacaactccttc-catagagatcatattgttcttgatggatactctcttttattcaaacaaactgtgctagcttt |
99 |
Q |
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||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
668349 |
acacgtacaagccttattcaaccaacacaactccttctcaaagagatcatattgttcttgatggatactctcttttattcaaacaaactgtgctagcttt |
668448 |
T |
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| Q |
100 |
atccctatgcacgctagcatttgcttcgtctttatactctcgtttgctaccatttcggcgagttagtcgtgttgagcaagtcatcatccaaactctaaac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
668449 |
atccctatgcacgctagcatttgcttcgtctttatactctcgtttgctaccatttcggcgagttagtcgtgttgagcaagtcatcatccccactctaaac |
668548 |
T |
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| Q |
200 |
tggtttgaatt |
210 |
Q |
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||||||||||| |
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| T |
668549 |
tggtttgaatt |
668559 |
T |
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