View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_12 (Length: 563)
Name: NF1379_low_12
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 30 - 550
Target Start/End: Complemental strand, 38014497 - 38013983
Alignment:
| Q |
30 |
attgagacaaagattcgttcatcctttcctcctccactgtgtggaagagagagatcagataaaagtaatcagttgagttgatcatttgatgaagatgccg |
129 |
Q |
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| T |
38014497 |
attgagacaaagattcgttcatcctttcctcc---actgtgtggaagagagagatcagataaaagtaatcagttgagttgatcatttgaagaagatgccg |
38014401 |
T |
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| Q |
130 |
tacgcgacgccgggaagctccgattacttggaattatatccagaaagaaaaatatcgtattttaagaatccctacattctcggagttactgctgctgctg |
229 |
Q |
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| T |
38014400 |
tacgcgacgccgggaagctccgattacttggaattatatccagaaagaaaaatatcttatttcaagaatccctacattctcggagttactgctgctgctg |
38014301 |
T |
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| Q |
230 |
gcattggtggtctcctcttcggttacgatactggtatgtagctaatcaaatcaatcccctttcttaaaattgtatcttgaatgataaaacaacaaatata |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
38014300 |
gcattggtggtctcctcttcggttacgatactggtatgtagctaatcaaatcaatcccctttcttaaaattgtatcttgaatgataa---atcaaatata |
38014204 |
T |
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| Q |
330 |
cttctgcgatgatgcaggtgttatttcaggggctcttctatatattaaagatgattttgatgatgttcgtaaaagtagcttccttcaggtacaatctttt |
429 |
Q |
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| T |
38014203 |
cttctgcgatgatgcaggtgttatttctggtgctcttctatatattaaagatgattttgatgatgttcgtaatagtagcttccttcaggtacaatctttt |
38014104 |
T |
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| Q |
430 |
ccgcattattcagattgttttgcctactttcaattccagattgttttacatctttatggttgcttgcaggaaactattgtaagcatggcattggttggtg |
529 |
Q |
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| T |
38014103 |
ccgcattattcagattgttttgcctactttcaattccagattgttttacatctttatggttgcttgcaggaaactattgtaagcatggcattggttggtg |
38014004 |
T |
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| Q |
530 |
caattattggagcagcaacag |
550 |
Q |
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| T |
38014003 |
caattattggagcagcaacag |
38013983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 423
Target Start/End: Original strand, 27007493 - 27007576
Alignment:
| Q |
339 |
tgatgcaggtgttatttcaggggctcttctatatattaaagatgattttgatgatgttcgtaaaagtagcttccttcaggtacaa |
423 |
Q |
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| T |
27007493 |
tgatgcaggtgttatatcaggggctc-tatgtatattaaagatgattttgacgatgtcaagagaagtagcttccttcaggtacaa |
27007576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 550
Target Start/End: Original strand, 27008272 - 27008354
Alignment:
| Q |
467 |
agattgttttacatctttatggttgcttgcaggaaactattgtaagcatggcattggt---tggtgcaattattggagcagcaacag |
550 |
Q |
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| T |
27008272 |
agattgttttacatctttatgtttcc----aggaaactattgtaagcatggcactggttggtggtgcaattattcgagcagcaacag |
27008354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 27007281 - 27007375
Alignment:
| Q |
136 |
acgccgggaagctccgattacttggaattatatccagaaagaaaaatatcgtattttaagaatccctacattctcggagttactgctgctgctgg |
230 |
Q |
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| T |
27007281 |
acgccgggaagtccttattacttagaattgtatctagaaagaaagatattggatttcaagaatccctacattcttggtgttactgctgctactgg |
27007375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 52772089 - 52772041
Alignment:
| Q |
341 |
atgcaggtgttatttcaggggctcttctatatattaaagatgattttga |
389 |
Q |
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| T |
52772089 |
atgcaggtgtgatatcaggagctcttctatatataaaagatgattttga |
52772041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 52769076 - 52769026
Alignment:
| Q |
496 |
caggaaactattgtaagcatggcattggttggtgcaattattggagcagca |
546 |
Q |
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| T |
52769076 |
caggaaacaattgtcagcatggcagtggctggtgcaattgttggagcagca |
52769026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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