View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1379_low_16 (Length: 510)

Name: NF1379_low_16
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1379_low_16
NF1379_low_16
[»] chr1 (2 HSPs)
chr1 (1-497)||(11983149-11983645)
chr1 (383-495)||(23496009-23496121)
[»] chr8 (2 HSPs)
chr8 (344-497)||(26450072-26450225)
chr8 (383-497)||(16182269-16182383)
[»] chr4 (4 HSPs)
chr4 (372-497)||(5151665-5151790)
chr4 (383-495)||(12303393-12303505)
chr4 (5-186)||(5151976-5152157)
chr4 (383-480)||(25271353-25271450)
[»] scaffold0066 (1 HSPs)
scaffold0066 (383-495)||(36438-36550)
[»] chr2 (1 HSPs)
chr2 (308-463)||(38358925-38359073)
[»] chr6 (1 HSPs)
chr6 (384-447)||(19572982-19573045)
[»] chr3 (2 HSPs)
chr3 (74-203)||(20717668-20717797)
chr3 (74-203)||(20719715-20719844)


Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 11983149 - 11983645
Alignment:
Q  1 gggggatcctctgtcccctattcttttttgccttgcaaaggaagttattagtagaagcttgacaaagatggtcagagaaggaaagttgaagcttattcat 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11983149 gggggatcctctgtcccctcttcttttttgccttgcaaaggaagttattagtagaagcttgacagagatggtcagagaaggaaagttgaagcttattcat 11983248  T
Q  101 ggcaccaggaaaatcaatattccatctcatattttatatgcagatgacatgatgattttttgcaaaggaacgaattccaacatcaaagctcttaaggatg 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11983249 ggcaccaggaagatcaatattccatctcatattttatatgcagatgacatgatgattttttgcaaaggaacgaattccaacatcaaagctcttaaggatg 11983348  T
Q  201 tctacttgaagtatgtagaatcttctggtcaaatggaaaatcctcagaaatcttcaatttatgcaggctcaatcactagtcatagattgtctcaggtatc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11983349 tctacttgaagtatgtagaatcttctggtcaaatggaaaatcctcagaaatcttcaatttatgcaggctcaatcaccagtcatagattgtctcaggtatc 11983448  T
Q  301 tcatcaacttggttttagcattggcactctaccatttcaatatctaggagttccaattttcagagaaaaaccaaaatatgtttattttcaagctattgct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  11983449 tcatcaacttggttttagcattggcactctaccatttcaatatctaggagttccaattttcagaggcaaaccaaaatatgtttattttcaagctattgct 11983548  T
Q  401 gataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttgttcaaagtatgcttc 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11983549 gataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttgttcaaagtatgcttc 11983645  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 495
Target Start/End: Original strand, 23496009 - 23496121
Alignment:
Q  383 tattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttg 482  Q
    ||||||||| ||||||  |||||||| |||   |||||  ||||||||||||| || |||||| | ||||| |||||||||||| | || |||||||| |    
T  23496009 tattttcaacctattggggataaagtaaaactgaagctcgcagcttggaaagcctctcttctcaccatggcaggtagagtgcaacttataaagagtgtgg 23496108  T
Q  483 ttcaaagtatgct 495  Q
    |||| || |||||    
T  23496109 ttcagagcatgct 23496121  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 344 - 497
Target Start/End: Complemental strand, 26450225 - 26450072
Alignment:
Q  344 ctaggagttccaattttcagagaaaaaccaaaatatgtttattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttc 443  Q
    ||||| ||||||||||| ||||  || ||||||||  || |||||||| || |||| || ||||| ||||| ||||| ||||||||||||||||||||||    
T  26450225 ctaggtgttccaatttttagaggcaagccaaaatacattcattttcaacctcttgcagacaaagtaaaaagtaagctctcagcttggaaagcatcccttc 26450126  T
Q  444 tctcaatggctggtagagtgcaattaatcaagagtgttgttcaaagtatgcttc 497  Q
    |||| || || ||||||||| | ||| | || ||||| ||||||||||||||||    
T  26450125 tctctattgcaggtagagtgtagttagtgaaaagtgtagttcaaagtatgcttc 26450072  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 497
Target Start/End: Original strand, 16182269 - 16182383
Alignment:
Q  383 tattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttg 482  Q
    ||||||||| || ||||||||||||| ||||  ||||| || ||||||||||| || ||| | || |||||||||| ||||||||||||||||||||| |    
T  16182269 tattttcaaccttttgctgataaagtaaaaaataagctatctgcttggaaagcttcacttttatctatggctggtaaagtgcaattaatcaagagtgtgg 16182368  T
Q  483 ttcaaagtatgcttc 497  Q
    | ||||  |||||||    
T  16182369 tacaaaacatgcttc 16182383  T

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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 372 - 497
Target Start/End: Complemental strand, 5151790 - 5151665
Alignment:
Q  372 caaaatatgtttattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaat 471  Q
    |||| |||| |||||||||| || ||||||||||||| ||||| ||||| ||||||||||||||||| ||||| || ||   |||||||||||||||| |    
T  5151790 caaagtatgcttattttcaacctcttgctgataaagttaaaagcaagctctcagcttggaaagcatctcttctatccattattggtagagtgcaattagt 5151691  T
Q  472 caagagtgttgttcaaagtatgcttc 497  Q
     ||||||||  |||||||||||||||    
T  5151690 aaagagtgtaattcaaagtatgcttc 5151665  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 495
Target Start/End: Original strand, 12303393 - 12303505
Alignment:
Q  383 tattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttg 482  Q
    ||||||||| ||||||| |||||||| |||  ||||||  | ||||||||||| || |||||||| ||||| || ||||||||||||||||||||||| |    
T  12303393 tattttcaacctattgcggataaagtaaaagtaaagctggctgcttggaaagcttcacttctctccatggcaggaagagtgcaattaatcaagagtgtgg 12303492  T
Q  483 ttcaaagtatgct 495  Q
    | ||||| |||||    
T  12303493 tgcaaagcatgct 12303505  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 186
Target Start/End: Complemental strand, 5152157 - 5151976
Alignment:
Q  5 gatcctctgtcccctattcttttttgccttgcaaaggaagttattagtagaagcttgacaaagatggtcagagaaggaaagttgaagcttattcatggca 104  Q
    |||||||| || ||| |||| |||||||||||| | |||||||| || || || || || ||| |||| || || |||||| | ||||||||  |||| |    
T  5152157 gatcctctatcacctcttctcttttgccttgcagaagaagttataagcaggagattaaccaagttggttagggagggaaagctcaagcttatcaatggta 5152058  T
Q  105 ccag-gaaaatcaatattccatctcatattttatatgcagatgacatgatgattttttgcaaaggaacgaattccaacatcaa 186  Q
    |||| || | |||| ||||| || || ||| | ||||| ||||| |||||||| ||||| |||||||| ||||| ||||||||    
T  5152057 ccagagatattcaa-attccttcacacattctttatgctgatgatatgatgatattttgtaaaggaacaaattcaaacatcaa 5151976  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 480
Target Start/End: Complemental strand, 25271450 - 25271353
Alignment:
Q  383 tattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgt 480  Q
    ||||||||| | |||||||||||||| |||   |||||| ||||||||||||| || || ||| | ||||| |||||| ||||  |||| ||||||||    
T  25271450 tattttcaaccaattgctgataaagtaaaattgaagcttgcagcttggaaagcctctctcctcaccatggcaggtagattgcagctaattaagagtgt 25271353  T

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Target: scaffold0066 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 495
Target Start/End: Complemental strand, 36550 - 36438
Alignment:
Q  383 tattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttg 482  Q
    ||||||||| ||||||| |||||||| |||  ||||||  | ||||||||||| || |||||||| ||||| || ||||||||||||||||||||||| |    
T  36550 tattttcaacctattgcggataaagtaaaagtaaagctggctgcttggaaagcttcacttctctccatggcaggaagagtgcaattaatcaagagtgtgg 36451  T
Q  483 ttcaaagtatgct 495  Q
    | ||||| |||||    
T  36450 tgcaaagcatgct 36438  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 463
Target Start/End: Original strand, 38358925 - 38359073
Alignment:
Q  308 cttggttttagcattggcactctaccatttcaatatctaggagttccaattttcagagaaaaaccaaaatatgtttattttcaagctattgctgataaag 407  Q
    |||||||||| |||||||  ||| ||||||   ||||| |||||||||||||||| ||  || || ||||||||       ||| ||||||||||||||     
T  38358925 cttggttttaacattggctttcttccatttacttatcttggagttccaattttcaaaggcaagcccaaatatgt-------caacctattgctgataaaa 38359017  T
Q  408 tcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtg 463  Q
    |||| |  |||||  |||||||||||||||||||||| ||| | ||||||||||||    
T  38359018 tcaagaataagctagcagcttggaaagcatcccttctatcagttgctggtagagtg 38359073  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 19572982 - 19573045
Alignment:
Q  384 attttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctc 447  Q
    |||||||| || |||| |||||||| ||||| ||||| ||| |||||||| |||||||||||||    
T  19572982 attttcaacctcttgcagataaagtaaaaagtaagctctcatcttggaaaacatcccttctctc 19573045  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 20717797 - 20717668
Alignment:
Q  74 agagaaggaaagttgaagcttattcatggcaccaggaaaatcaatattccatctcatattttatatgcagatgacatgatgattttttgcaaaggaacga 173  Q
    ||||| || ||||||||| | || ||||| || ||| | ||||||||||| || ||||| || ||||  ||||| ||||||||||||| || ||| || |    
T  20717797 agagatggtaagttgaagttgatgcatggtactagggacatcaatattccttcacatatcttgtatgttgatgatatgatgatttttttcagaggcacaa 20717698  T
Q  174 attccaacatcaaagctcttaaggatgtct 203  Q
    | || | |||||| ||||||||| ||||||    
T  20717697 actctatcatcaatgctcttaagaatgtct 20717668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 20719844 - 20719715
Alignment:
Q  74 agagaaggaaagttgaagcttattcatggcaccaggaaaatcaatattccatctcatattttatatgcagatgacatgatgattttttgcaaaggaacga 173  Q
    ||||| || ||||||||| | || ||||| || ||| | ||||||||||| || ||||| || ||||  ||||| ||||||||||||| || ||| || |    
T  20719844 agagatggtaagttgaagttgatgcatggtactagggacatcaatattccttcacatatcttgtatgttgatgatatgatgatttttttcagaggcacaa 20719745  T
Q  174 attccaacatcaaagctcttaaggatgtct 203  Q
    | || | |||||| ||||||||| ||||||    
T  20719744 actctatcatcaatgctcttaagaatgtct 20719715  T

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